Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccatccccgtatttttctcatctctctccataattcaaatatttcattttcttgttactagcttctctctcttttttttgtttgtcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTCAGCGATGACCTTCAGAAG

Basic information

species Vitis vinifera
transcript Vv14s0068g01280.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G26220.1 (Glycine max), 3'ss of exon 1
----------------gtacgccatccccgtatttt---tctcatctctctccataattcaaatatttcattttcttgttactagcttctctctcttttttttgtttgtct-----tttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTCAGCGATGACCTTCAGAAG
                   | |  || |  | | |    || ||| | | |  ||||  |||  |    |    |  ||  ||  ||| |||     ||||   |||  ||     || ||||||||||||||| |||||||| || ||||||||||| |||||  | ||||||||||| || ||    |||
gtactctctctctctctctctctctctctctctctcacatcacatttttttttataac-caacaaaacaaccaccgcgtctcttccttttcttctcattttcattttccctccaaattcgcagTTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAG

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G07260.1 (Glycine max), 3'ss of exon 1
gtacgccatccccgtatttttctcatctctctccataattcaaatatttcattttcttgttactagcttctctctcttttttttgtttgtcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTCAGCGATGACCTTCAGAAG
||| |   || |  |  | | | |||| || |   |  ||  ||      |    |  |   ||  ||| || ||||  ||||   |     || ||||||||| ||||| |||||||| || ||||||||||| |||||  | ||||||||||| ||       |||
gtaagtactctctct-ctctacacatcacttttttt--ttataaccaacgaccaccgcgcctcttacttttc-ctctcattttccctccaaattcgcagTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031454|gb|FQ446657.1|FQ446657
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|349830231|gb|FQ420491.1|FQ420491
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACGCTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|351024893|gb|FQ433310.1|FQ433310
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|71881861|gb|DT030916.1|DT030916
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|110699022|gb|EE077184.1|EE077184
EST:     CATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: CATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|110693329|gb|EE069475.1|EE069475
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|349833078|gb|FQ416456.1|FQ416456
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|71882447|gb|DT031502.1|DT031502
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|27581998|gb|CB004693.1|CB004693
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|352785589|gb|FQ475592.1|FQ475592
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|71883798|gb|DT032853.1|DT032853
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|71858149|gb|DT007204.1|DT007204
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|351020303|gb|FQ445910.1|FQ445910
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|110693330|gb|EE069469.1|EE069469
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|110700866|gb|EE077894.1|EE077894
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|294964114|gb|GW837917.1|GW837917
EST:     GTTTACGGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
EST: gi|349830278|gb|FQ420538.1|FQ420538
EST:     GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACGCTCCTCTCTACAGG                         TTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC
genomic: GTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatc ... tcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcattttcttgttactagcttctctctcttttttttgtttgtcttttgcagTTCAATATCCCTAATCTCCGTGTAGGAACCCTAGATTCCCTATTATCCCTCAGCGATGACCTTCAGAAG
               ttactagcttctctct  CT-rich tract
                              tcttttttttgttt  TA-rich tract