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...ttttccaacaccttctcaacaatctaaagaagagattttatttgtgtgttaaaaaatgttaggaaggagtgatctaaaattgagattattttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGAAGGAGCAGGGAGTTAGGGGATTTTTCAGGGGTTGGGTGCCTACCCTGC
species | Vitis vinifera |
transcript | Vv14s0068g01260.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAG ATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGEST: gi|110707594|gb|EE084171.1|EE084171
genomic: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAGgtctgatttg ... ttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
EST: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAG ATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGEST: gi|110685233|gb|EE063420.1|EE063420
genomic: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAGgtctgatttg ... ttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
EST: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAG ATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGEST: gi|71856762|gb|DT005817.1|DT005817
genomic: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAGgtctgatttg ... ttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
EST: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAG ATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGEST: gi|110379440|gb|EC944634.1|EC944634
genomic: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAGgtctgatttg ... ttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
EST: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAG ATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGEST: gi|71877284|gb|DT026339.1|DT026339
genomic: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAGgtctgatttg ... ttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
EST: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAG ATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
genomic: TGACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAATGTAATATGCAGgtctgatttg ... ttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTG
gtgttaaaaaatgttaggaaggagtgatctaaaattgagattattttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGAAGGAGCAGGGAGTTAGGGGATTTTTCAGGGGTTGGGTGCCTACCCTGC
atctaaa putative branch site (score: 3)
ttttttgttt putative PPT
atctaaaattgagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttccaacaccttctcaacaatctaaagaagagattttatttgtgtgttaaaaaatgttaggaaggagtgatctaaaattgagattattttttgtttagATTGACCCTGCAAAGTACAAGAGCATTTCGTCTGGATTTGGAGTTTTGCTGAAGGAGCAGGGAGTTAGGGGATTTTTCAGGGGTTGGGTGCCTACCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -tccaaca
- - - - - ccttctc
- - - - - - - - -aacaatc
- - - - - - - - - - - - taaagaa
- - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga