Sequence
atgc intronic sequence ATGC exonic sequence...acagcatccatggctcaaatagtgttattgaaggttttggcgatccatgagatttagctcatgatatttgactaaaccttgagtttttaattttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G27800.1 (Glycine max), 3'ss of exon 1
acagcatccatggctcaaatagtgttattgaaggttttggcgatccatgagatttagctcatgatatttgactaaaccttgagttttta---attttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
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-tgacaaccttggtttagatgacgaaatttggctaatttttgttccttcct-tcaatgttgttatatttt-ttgtggtatgagattttgggtattatatgcagAACATAGTTCTGACCGAGCTGAGTTCTTGAAGCTCTGCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G05180.1 (Glycine max), 3'ss of exon 1
acagcatccatggctcaaatagtgttattgaaggttttggcgatccatgagatttagctcatgatatttgactaaaccttgagttttta--attttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
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tttgtatatatattttaatttagatga--agaaatttggctaattttttccccttcaatgttattatattccgtggtatgaaattttgggtattatatgcagAACATAGTTCTGACCGGGCTGAGTTCTTGAAGCTCTCCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 1
acagcatccatggctcaaatagtgt--tattgaaggttttggcgatccatgagattt-----agctcatgatatttgactaaaccttgagttttta---attttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
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----------tgacttagatgatatagcatagaaacagctttctccccactgcctcttccaaagctactattttctttgtagacttgagtcgtttgggtactatgtgcagAACATAGTGCTGACCGAGTTGAATTTTTGAAGCTCTGCAAAAGAATAGAGTATACAATTCGAGCTTGGTATCTTCTACAGTTTGAGGACATGATG
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 1
acagcatccatggctcaaatagtgttattg-aaggttttggcgatccatgagatttagctcatgatatttgactaaaccttgagttttta---attttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
| | | ||| || || | || | || | | |||| | | | | || || | ||| ||| ||||||||||||||| ||||||| | || ||||| ||||| ||||||||| | || || || || ||||||||||| ||||||||||||||||| |||||
-gatgaaataacatagaaacagctttctcccaacacccacaccctcttccaaa---agctgctattttctttgtagacttgagtcgtttgggtattatgtgcagAACATAGTGCTGACCGAGTTGAATTTTTGAAGCTCTGCAAGAGAATAGAGTATACCATTCGAGCTTGGTACCTTCTACAGTTTGAGGACATGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgagatttagctcatgatatttgactaaaccttgagtttttaattttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
ttgagtttttaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acagcatccatggctcaaatagtgttattgaaggttttggcgatccatgagatttagctcatgatatttgactaaaccttgagtttttaattttgtgcagAACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - -ccatggc
- - - - - - - -caaatag
- - - - - - - - - - - - - - - - - - - - - - -catgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaacc