1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataatttgtcctctgtttcatcaccattttccttcccttcttttgttccttttggtatacaaacaagatggagtaaggtatctgacaggatatattttagGTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTGGCAATAGCCCAAAATGTCGACACAGGAGCAGTTTTAATGCAAGGCTTTG
species | Vitis vinifera |
transcript | Vv14s0068g00910.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGCTTCCTCCAAGAAACCCCACCAAGATCTTTCCCTTGAAGCTAAG GTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTGEST: gi|30137757|gb|CB923095.1|CB923095
genomic: TTTCTGCTTCCTCCAAGAAACCCCACCAAGATCTTTCCCTTGAAGCTAAGgtacttgatt ... tatattttagGTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTG
EST: TTTCTGCTTCCTCCAAGAAACCCCACCAAGATCTTTCCCTTGAAGCTAAG GTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAAG-EST: gi|161712665|gb|FC062237.1|FC062237
genomic: TTTCTGCTTCCTCCAAGAAACCCCACCAAGATCTTTCCCTTGAAGCTAAGgtacttgatt ... tatattttagGTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCA-GT
EST: TTTCTGCTTCCTCCAAGAAACCCCATCAAGATCTTTCCCTTGAAGCTAAG GTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTG
genomic: TTTCTGCTTCCTCCAAGAAACCCCACCAAGATCTTTCCCTTGAAGCTAAGgtacttgatt ... tatattttagGTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTG
ttccttttggtatacaaacaagatggagtaaggtatctgacaggatatattttagGTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTGGCAATAGCCCAAAATGTCGACACAGGAGCAGTTTTAATGCAAGGCTTTG
atctgac putative branch site (score: 3)
atatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatttgtcctctgtttcatcaccattttccttcccttcttttgttccttttggtatacaaacaagatggagtaaggtatctgacaggatatattttagGTTGAAACATTGTTAGACAGTGTGAAGTGGGATGACAAAGGTTTGGCAGTGGCAATAGCCCAAAATGTCGACACAGGAGCAGTTTTAATGCAAGGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - tgtcctc
- - - - - - - - - catcacc
- - - - - - - - - - - - - - - ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa