1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaagcatatgttggggctcagtatgtaattggttactgtatgtgaaggtgtcttctgggcttcgtttgttgttccttactaatttagttcaaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTGGAGAAGACAATAGAAGTTCTCATGATTTCTTCACCCAATCGCAATGAC
species | Vitis vinifera |
transcript | Vv14s0068g00870.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|30296756|gb|CB973550.1|CB973550
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|110412202|gb|EC977942.1|EC977942
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: CCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|32272355|gb|CD721514.1|CD721514
genomic: CCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|30324328|gb|CD007590.1|CD007590
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|110389979|gb|EC954859.1|EC954859
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|110417324|gb|EC983371.1|EC983371
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTEST: gi|77587339|gb|DV222811.1|DV222811
genomic: ACTGGTAGACACAGGCAACGCTATGAGAACAACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
EST: AACTTACGCCTTGTTTCTGG ATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
genomic: AACTTACGCCTTGTTTCTGGgtatgcatcc ... caaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTT
aaggtgtcttctgggcttcgtttgttgttccttactaatttagttcaaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTGGAGAAGACAATAGAAGTTCTCATGATTTCTTCACCCAATCGCAATGAC
tactaat putative branch site (score: 1)
ttactaatttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcatatgttggggctcagtatgtaattggttactgtatgtgaaggtgtcttctgggcttcgtttgttgttccttactaatttagttcaaacaacagATGTATTCCTTACAGACAGACCAAGAACCATGAAGACCACAGCACTGATTTGGAGAAGACAATAGAAGTTCTCATGATTTCTTCACCCAATCGCAATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
gcaagca
- - - - - gttgggg
- - - - - - - - - -cagtatg
- - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - cttctgg