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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatctcatttcctattcattttaatgatttttttttcacatgcagccttctaaatcatcagatctcagtgtctgaccagttcattattccaatgtcctgatctcccaaaacatgtttgtgtgactgtttttcagGTCCACCCAACTCCAAGGACTCGGTTCCAAATTCTGGTAGCATCTTTTGGTCTCCATCCCTGATCATGAAAGTGGTTGCAGCCTTCTCCATGAGCATTCA

Basic information

species Vitis vinifera
transcript Vv14s0068g00820.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689254|gb|EC936055.1|EC936055
EST:     ATTGCCTGGAAGATGTGGACAACATGTTAACCCTCTCTCCTGTCTTTCAA                         GTCCACCCAACTCCAAGGACTCGGTTCCAAATTCTGGTAGCATCTTTTGGT
genomic: ATTGCCTGGAAGATGTGGACAACATGTTAACCCTCTCTCCTGTCTTTCAAgtatgcatct ... tgtttttcagGTCCACCCAACTCCAAGGACTCGGTTCCAAATTCTGGTAGCATCTTTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattattccaatgtcctgatctcccaaaacatgtttgtgtgactgtttttcagGTCCACCCAACTCCAAGGACTCGGTTCCAAATTCTGGTAGCATCTTTTGGTCTCCATCCCTGATCATGAAAGTGGTTGCAGCCTTCTCCATGAGCATTCA
               tcctgat  putative branch site (score: 3)
                                            ctgtttttc  putative PPT
                           aaaacat  TA-rich tract