Sequence
atgc intronic sequence ATGC exonic sequence...aacttatttgtagctgttttattttggctgcatatgcataaatttttggataattgagaggggaattttagttttgatttctggtttttgggaaatttagGGTTTGATCTGCGGTGGTAAGAGCTTCTGGAGAGTTTGGGGCTCAAATCTAAGTGTTGTTGGTTGAGAATTGCTAATTTTTGAAGTCTCTGTTGGTCCTG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864884|gb|DT013939.1|DT013939EST: TGAAGATTTGCTTGTCTTTAGCTCCTTTTGGTTGTTATTCAGGAAAATTG GGTTTGATCTGCGGTGGTAAGAGCTTCTGGAGAGTTTGGGGCTCAAATCTA
genomic: TGAAGATTTGCTTGTCTTTAGCTCCTTTTGGTTGTTATTCAGGAAAATTGgtgagatacc ... ggaaatttagGGTTTGATCTGCGGTGGTAAGAGCTTCTGGAGAGTTTGGGGCTCAAATCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggataattgagaggggaattttagttttgatttctggtttttgggaaatttagGGTTTGATCTGCGGTGGTAAGAGCTTCTGGAGAGTTTGGGGCTCAAATCTAAGTGTTGTTGGTTGAGAATTGCTAATTTTTGAAGTCTCTGTTGGTCCTG
ttttgat putative branch site (score: 4)
aattttagttttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacttatttgtagctgttttattttggctgcatatgcataaatttttggataattgagaggggaattttagttttgatttctggtttttgggaaatttagGGTTTGATCTGCGGTGGTAAGAGCTTCTGGAGAGTTTGGGGCTCAAATCTAAGTGTTGTTGGTTGAGAATTGCTAATTTTTGAAGTCTCTGTTGGTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - tgtagct
- - - - - - - - - - - - - - - catatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg