Sequence
atgc intronic sequence ATGC exonic sequence...agttgtaacaacatatactgaagcatattaaaagaaagtatttgtgcttgaattcaatatatatctcaaaaatgctggcttgatcttttttgttcaacagGGAGGATTTTGAGAAAATAGGATTGAGTAGCTTCGTCACTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGATGAATTTTCTGGGCTGGCGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G30820.2 (Glycine max), 3'ss of exon 2
--agttgtaac---aacatatactgaagcatattaaaagaaagtatttgtgcttgaattcaatatatatctcaaaaatgctggcttgatcttttttgttcaacagGGAGGATTTTGAGAAAATAGGATTGAGTAGCTTCGTCACTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGATGAATTTTCTGGGCTGGCGGAT
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cagtttataattttgccctgtacattactctctttttagaaagt---tatgtagaatgttaaatcattcctgtcgtataattactt--ttttttcttctttgtagGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTGCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATACCTTTACTGGCATGGCTGAC
upper sequence: Vv14s0066g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G08460.1 (Glycine max), 3'ss of exon 1
---agttgtaacaacatatactgaag-catattaaaagaaagtatttgtgcttgaattcaatatatatctcaaaaatgctggcttgatcttttttgttcaacagGGAGGATTTTGAGAAAATAGGATTGAGTAGCTTCGTCACTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGATGAATTTTCTGGGCTGGCGGAT
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tcataatgttgccgtgtacattactctctttttagtaggttatgtagaatatcaaatcattcctatgtcgtataattact----ttattttttcttccctgtagGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTTCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATGACTTGACTGGCATGGCTGAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttgaattcaatatatatctcaaaaatgctggcttgatcttttttgttcaacagGGAGGATTTTGAGAAAATAGGATTGAGTAGCTTCGTCACTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGATGAATTTTCTGGGCTGGCGGAT
gcttgat putative branch site (score: 5)
tcttttttgttc CT-rich tract
aattcaatatatatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttgtaacaacatatactgaagcatattaaaagaaagtatttgtgcttgaattcaatatatatctcaaaaatgctggcttgatcttttttgttcaacagGGAGGATTTTGAGAAAATAGGATTGAGTAGCTTCGTCACTGTGGGAGTGAGGGACATTCAGGGTGAGGGATTTCCTGATGAATTTTCTGGGCTGGCGGAT
- - gtaacaa
- - - - - - - - - tgaagca
- - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttg