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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG

Basic information

species Vitis vinifera
transcript Vv14s0060g02260.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 3'ss of exon 1
gtctctattctctctctttttctctttatatatg------tgtcttt-----ccgtgatatgatt--tgcgattttga-tgaatggtggtggtg------gtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
|| |    ||||||||| | ||    |      |      |  ||||     | | ||| |  |   || ||||| |  ||| | |||| |||        |  ||||    |||| ||| ||||| |||||||| | |||  ||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||| | |
gtttgctctctctctctctctccgcctccgcgggaaaccctagcttttgccccagcgatctcctccatgggatttggtctgatttgtgggggtttgtctcatcgggtgcctcagGATGAGCTGCAGCGGACGAACCTTGAGGTGGAATCCTACAAGGAGAAGATCAAGGAGAACCAGGAGAAGATCAAACTCAACAAGCAGCTGCCTTACCTTG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------------gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtgg--------tggtatggtgttga-----agGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
                                                       |    || |  |   ||  ||| |    |   | | |    |   || | ||| ||  |    |||  |||   ||        |||| || | |||      |||| ||| ||||| |||| ||| |||||  ||| || |  ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| | |
gcaagcccgcctccgctctctctctctctcccctaaccctagatccccctccctccgaggtttttgccagttgcctcctccggtgaatctttgcttggattagggtttccgggtcgtctgatcggtttggggttttttttggtgtgattttggtgcgcagGATGAGCTGCAGCGGACCAACTTGGAGCTGGAATCGTTCAAGGAGAAGATTAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTTCCCTACCTCG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G032505_T01 (Zea mays), 3'ss of exon 1
------gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggt---ggtatggtgttga-------agGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
      |   | | ||          || ||     |  |   ||| | | | || | |||||  || ||||   ||| | | ||   | | |  | |||        |||| ||||||||| |||||||| |||||| ||| || |  ||||||||||| ||||| || || ||||| || ||||||||||||||||| |||||| | |
gtgagcgagcccagtcctagatccgatccctgcgggttcggaactt-cggcgttagggtttgc--ttctgatctgtggggtttgtttggtttttctcttgccgcacccagGACGAGTTGCAGCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 1
------gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggt---ggtatggtgttga-------agGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG------------
      |   | | ||          || ||     |  |   ||| | | | || | |||||  || ||||   ||| | | ||   | | |  | |||        |||| ||||||||| |||||||| |||||| ||| || |  ||||||||||| ||||| || || ||||| || ||||||||||||||||| |||||| | |            
gtgagcgagcccagtcctagatccgatccctgcgggttcggaactt-cggcgttagggtttgc--ttctgatctgtggggtttgtttggtttttctcttgccgcacccaggacgagttgcagCGGACGAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCGTTGGCAACATCG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G027282_T01 (Zea mays), 3'ss of exon 1
gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttga-agGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
||    |  | ||  |  |  | |    |    ||  |     |||    || |       |||||    | || |   ||   |||||| | |||| ||| ||||| || ||||| |||||  ||| ||    |||||||||| ||||||||| ||||||||||| ||||||||||||||||| || ||| | |
gtgcggaaaccctagccctagccccgc-tgcgcgtcgcccagagtgtcgggactgttctgattgatttgggatgttttgggctgggtgttcatagGACGAGCTGCAGCGGTCGAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G29250.1 (Glycine max), 3'ss of exon 1
----------------------------------------gtctctattctctctctttttc--tctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtat-ggtg-ttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
                                          |   || || ||  ||   |  ||||| |   ||  ||  ||         ||| | | || ||||   |  | |   || | | ||||  ||||||| |||||||||||||| ||  |||||| ||| || || ||||| |||||||||||||||||||||||||| |||||||| |||||| | |||||| | |
gtacaatctttttgttttttcttctgcttctgtaaccctaaccctaatcctatcgattacactatcttttttgctgcttccgtcttcttagccattagggtttctgatttttaattgaattgtttttggtggctgaagGAAGAGTTGCAGAGGACCAATTTGGAGTTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G38030.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------------gtctctatt-ctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
                                                      | || ||| | || |||||||  |||  |   | |   |  || |  || | |||  |||||| ||  |      | ||  |  |    ||||||| |||||||||||||| ||  |||| | ||| || || ||||| |||||||||||||||||||||||||| |||||||| |||||| | |||||| | |
gtatactcttttctttctgtttcgtttttttccctgcttctgtaaccctaaccctatcgattacactatcttttttccttcttccgttttcttagccat--tagggtttctgattttaattga-----attgtccttcgtgactgaagGAAGAGTTGCAGAGGACCAATTTGGAATTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTGCCCTACCTCG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 1
gtctctattctctctctttttctcttta---tatatgtgtctttccgtga-tatgatttgc-gattttgatgaa-tggtggtggtggt--atggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
  ||| | |     |  ||   |    |   ||  | | ||||   |  | |  ||| ||  ||  ||| | |  | ||| |  |  |  |||| | |  |||| ||   ||| || || ||  | || || || || || ||||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||
--ctcaactgagattgattgaattgaaaagctacgtctttcttgttgcaaattggatatgttgaaattgctcatcttgtgtttttctttgatggggatttagGAAGACGCGCAAAGAACAAATCTAGAATGTGATTCTTACAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAACTCAACAAGCAGCTGCCTTACTTGG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 3'ss of exon 1
---------gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
            | |||  |  ||  | || |  | || |   ||   |||      ||  ||||   | ||  |   |       || |  |  ||||| |||| || | ||||||||| ||| | || | ||| ||    |||||||| || |||||||| ||||||||||| ||||| ||||| |||||||| ||||| |
gattagaagacatttatatttactggtcttttgctcat-tggatgaaattcaccagaattttttgatgtctttttctctcaaatacgttgatt--tgttgtagGAAGAATCGCAGAGGACAAACCTTGATTTGGAATCAGTGAAGGAGAAAATAAAGGAGAACCAGGAGAAGATTAAGCTTAACAAACAGCTTCCTTACTTAG

upper sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgat-ttgcgattttgatgaatggtggt------ggtggtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
                                             | | |||  |         |||   |      ||||  |  | ||   |  | | | | | |  || |    || |      ||||| || |  ||  |||| ||   ||| ||        ||||    ||  |    || || || |||||||||||||| |||||||||||||| || |||||||| || ||| | |
gttttttctgcgccttgagtatggcgcgcctggttcatggttggatatgtatgttagtctgaggtcttgctgggggggtgtagtagcatggggttgtgtcgaggtgtgaattatcaatgatcggatgggtgggattggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864441|gb|DT013496.1|DT013496
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71860997|gb|DT010052.1|DT010052
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110724320|gb|EE100046.1|EE100046
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71859210|gb|DT008265.1|DT008265
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71858458|gb|DT007513.1|DT007513
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTAGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71857850|gb|DT006905.1|DT006905
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGCGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110685213|gb|EE063376.1|EE063376
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|294964455|gb|GW838258.1|GW838258
EST:     ACATTGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71859776|gb|DT008831.1|DT008831
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71863186|gb|DT012241.1|DT012241
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110724441|gb|EE100272.1|EE100272
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110722856|gb|EE099502.1|EE099502
EST:     ACATTGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71861858|gb|DT010913.1|DT010913
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|110732813|gb|EE108430.1|EE108430
EST:     ACATTGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|34549827|gb|CF518059.1|CF518059
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|34544589|gb|CF512821.1|CF512821
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|37184438|gb|CF603792.1|CF603792
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
EST: gi|71879123|gb|DT028178.1|DT028178
EST:     ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAG                         GAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC
genomic: ACATCGCTAGGGCTTCTCGCCTTCTCGATAACGAAATCCGAATTCTCAAGgtctctattc ... ggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG
                    ttttgat  putative branch site (score: 4)
       atatgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctctattctctctctttttctctttatatatgtgtctttccgtgatatgatttgcgattttgatgaatggtggtggtggtatggtgttgaagGAGGAGTTGCAGAGGACGAACATGGAGTGGGACTCCTATAAGGAGAAGATCAAGGAGAATCAGGAGAAGATCAAGCTCAACAAGCAGCTTCCCTACTTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT