Sequence
atgc intronic sequence ATGC exonic sequence...ttaaggagcggatcgttgtatttttagtgtgtttttacttaaattttgtgatgaattatctctgaagactgaactgggtgtcctaactttcggttaacagATTCTTGTAGGAGTCTCCATCTTGCTAACAGGCTGGATCGTGACACGAGTGGTGTAATGGTTATTACCAAGTCCCACCAAGTAGCTGCCAAGCTCATGAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77582976|gb|DV220499.1|DV220499EST: GACGATTTTGTTATCGGTGAGTCGGATGCTCGACGACTCGGATGGACACG ATTCTTGTAGGAGTCTCCATCTTGCTAACAGGCTGGATCGTGACACGAGTG
genomic: GACGATTTTGTTATCGGTGAGTCGGATGCTCGACGACTCGGATGGACACGgtaatggtct ... cggttaacagATTCTTGTAGGAGTCTCCATCTTGCTAACAGGCTGGATCGTGACACGAGTG
EST:
gi|161710694|gb|FC060279.1|FC060279EST: GACGATTTTGTTATCGGTGAGTCGGATGCTCGACGACTCGGATGGACACG AATTCTTGTAGGAGTCTCCATCTTGCTAAACAAGGCTGGATCGTGACACGG
genomic: GACGATTTTGTTATCGGTGAGTCGGATGCTCGACGACTCGGATGGACACGgtaatggtct ... cggttaacagA-TTCTTGTAGGAGTCTCCATCTTGCTAA-CA-GGCTGGATCGTGACACG-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgatgaattatctctgaagactgaactgggtgtcctaactttcggttaacagATTCTTGTAGGAGTCTCCATCTTGCTAACAGGCTGGATCGTGACACGAGTGGTGTAATGGTTATTACCAAGTCCCACCAAGTAGCTGCCAAGCTCATGAA
tcctaac putative branch site (score: 1)
ctttc CT-rich tract
atgaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaaggagcggatcgttgtatttttagtgtgtttttacttaaattttgtgatgaattatctctgaagactgaactgggtgtcctaactttcggttaacagATTCTTGTAGGAGTCTCCATCTTGCTAACAGGCTGGATCGTGACACGAGTGGTGTAATGGTTATTACCAAGTCCCACCAAGTAGCTGCCAAGCTCATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgt