1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atggggtttcttgatagcggcttgcttatttctcattctaatttcttattgaagttattcttttttctaaataagttttgttttattttatgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCTTCAAG
species | Vitis vinifera |
transcript | Vv14s0060g00830.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAG CCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCEST: gi|30126361|gb|CB911700.1|CB911700
genomic: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: GATCAGAACCAG CCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCEST: gi|110723141|gb|EE100115.1|EE100115
genomic: GATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: ATGGATCAGAACCAG CCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCEST: gi|294964678|gb|GW838481.1|GW838481
genomic: ATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: CCATAGAAGGTCTTTCAATCTCTTGAAATTTC-GGATGGATCAGAACCAG CCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCATGTCCTCEST: gi|71874522|gb|DT023577.1|DT023577
genomic: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAG CCTCCTGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCEST: gi|110730513|gb|EE107677.1|EE107677
genomic: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAG CCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCEST: gi|349817728|gb|FQ407717.1|FQ407717
genomic: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAG CCTCCTGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCEST: gi|71876447|gb|DT025502.1|DT025502
genomic: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
EST: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAG CCTCCTGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
genomic: CCATAGAAGGTCTTTCAATCTCTTCAAATTTCGGGATGGATCAGAACCAGgtgagttgac ... tgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTC
ttattgaagttattcttttttctaaataagttttgttttattttatgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCTTCAAG
ttctaaa putative branch site (score: 2)
aagttattcttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggggtttcttgatagcggcttgcttatttctcattctaatttcttattgaagttattcttttttctaaataagttttgttttattttatgatgcacagCCTCCAGGGGAAAACTACGCCCACCCAAAGATTTGTTTCTTTCACGTCCTCTTCAAG
- ggggttt
- - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - -ctcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataag