Sequence
atgc intronic sequence ATGC exonic sequence...atagtatttgtattttctccctttctagtggtctctatgtgcattaacagatgaagtcatcgttattttcaacattttatatatacatatgatttttcagATTACAGGATCAGATGAAGACAAATACCCATTCACAAGGAAAGTGCAAAGGGACATATGGAGCCATCAGCATCCATTGAATTGCCGAGATCCTAATGTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0036g01090.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G41070.1 (Glycine max), 3'ss of exon 4
atagtatttgtattttctccctttctagtggtctctatgtgcattaacagatgaagtcatcgttattttcaacattttatatatacatatgatttttcagATTACAGGATCAGATGAAGACAAATACCCATTCACAAGGAAAGTGCAAAGGGACATATGGAGCCATCAGCATCCATTGAATTGCCGAGATCCTAATGTAA-------
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---tcattcagatcataaaaaaat---gacaattagatttgtatctaaaaagaatgttgcaattacctgccatgattattatatagaagct-tttggcagattgcagGATCTGATGAAGAGAACTATCCTTTAACTAGAAAAGTTCAACGTGACATATGGATCCATCAGCATCCATTAAACTGTAACAACCCGAATGTCAAGTTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacagatgaagtcatcgttattttcaacattttatatatacatatgatttttcagATTACAGGATCAGATGAAGACAAATACCCATTCACAAGGAAAGTGCAAAGGGACATATGGAGCCATCAGCATCCATTGAATTGCCGAGATCCTAATGTAA
cattaac putative branch site (score: 2)
tttttc putative PPT
ttattttcaacatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagtatttgtattttctccctttctagtggtctctatgtgcattaacagatgaagtcatcgttattttcaacattttatatatacatatgatttttcagATTACAGGATCAGATGAAGACAAATACCCATTCACAAGGAAAGTGCAAAGGGACATATGGAGCCATCAGCATCCATTGAATTGCCGAGATCCTAATGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - taacaga
- - - - - - - - - - - - - - - - - - - - - - - - - -tgaagtc