1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatcttccttcactttttctatattacggatccaaaaccttgcacttttcctttggatacagctctggttaacttaaatgcttttgttcgtgtcaatagGCATCTTTTGTAAAACCTCAAGATTCTGCTGCTTTAGCTGACACTGGCTCACAGGCTTCCAAAACTTCTCAGTTGCGATCTCAAGCTCCTTGTAAAG
species | Vitis vinifera |
transcript | Vv14s0030g02200.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCAAGAGCCGCCTCAATTTGGCTTGTGCTGCTGTCGCTCTCTCTCGG GCATCTTTTGTAAAACCTCAAGATTCTGCTGCTTTAGCTGACACTGGCTCA
genomic: TCCTCAAGAGCCGCCTCAATTTGGCTTGTGCTGCTGTCGCTCTCTCTCGGgtaattattc ... gtgtcaatagGCATCTTTTGTAAAACCTCAAGATTCTGCTGCTTTAGCTGACACTGGCTCA
cttttcctttggatacagctctggttaacttaaatgcttttgttcgtgtcaatagGCATCTTTTGTAAAACCTCAAGATTCTGCTGCTTTAGCTGACACTGGCTCACAGGCTTCCAAAACTTCTCAGTTGCGATCTCAAGCTCCTTGTAAAG
ggttaac putative branch site (score: 3)
ttaacttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcttccttcactttttctatattacggatccaaaaccttgcacttttcctttggatacagctctggttaacttaaatgcttttgttcgtgtcaatagGCATCTTTTGTAAAACCTCAAGATTCTGCTGCTTTAGCTGACACTGGCTCACAGGCTTCCAAAACTTCTCAGTTGCGATCTCAAGCTCCTTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -ccttcac
- - - - - - - - - - - - - - - - -caaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacttaaa