Sequence
atgc intronic sequence ATGC exonic sequence...gtccaagggaaaaaattaaactacttcaaacgagtagatattaatagtgttgtcatatatcttttttggaattccatcataataatgtgtgtgttcacagCTTCGACTTGCAGAGGAGAGATGTGAAGAAGCAGAGGCGAGAGCTAGGCAACTTGAAAAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g00770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G40270.1 (Glycine max), 3'ss of exon 8
gtccaagggaaaaaat-taaactacttcaaacgagtagatattaatagtgttgtcatatat---cttttttggaattccatcataataatgtgtgtgttcacagCTTCGACTTGCAGAGGAGAGATGTGAAGAAGCAGAGGCGAGAGCTAGGCAACTTGAAAAACAG
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-ctgaaggctgataacatgaagtttttcata---atgaaaattaattttgttttaatatatacaccatttttttggcacaccattctgatatgtgtatccacagCTTCGACTTGCAGAAGAGAAGTGTGAAGAAGCTGAATCAAGAGTTAGGCAACTAGAACAACAG
upper sequence: Vv14s0030g00770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G08630.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------------------------------------------------------------------------------gtccaagggaaaaaattaaactacttcaaacgagtagatattaatagtgttgtcatatatcttttttggaattccatcataataatgtgtgtgttcacagCTTCGACTTGCAGAGGAGAGATGTGAAGAAGCAGAGGCGAGAGCTAGGCAACTTGAAAAACAG
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gtgatgccagtaaattttcacagttggtgtcagtatgcattacattctttgtgaagttagataatcctatctaaattttttgtcatggttgttggcttgttgctaagattctttgtaaagttagataatccttgtacaatt---tattatggtttgcatcccatcctaatt---tgtgcatccccagCTTCGACTTGCAGAAGATAAATGTGAAGAGGCTGATGCAAGAGCTAAGCAACTTGAGAAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgttgtcatatatcttttttggaattccatcataataatgtgtgtgttcacagCTTCGACTTGCAGAGGAGAGATGTGAAGAAGCAGAGGCGAGAGCTAGGCAACTTGAAAAACAG
tcatatatctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccaagggaaaaaattaaactacttcaaacgagtagatattaatagtgttgtcatatatcttttttggaattccatcataataatgtgtgtgttcacagCTTCGACTTGCAGAGGAGAGATGTGAAGAAGCAGAGGCGAGAGCTAGGCAACTTGAAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - -aaaaaat
- - - - - - - - - - - - - caaacga
- - - - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcat