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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttcttcattatgtagatttgttctgttcactacatctggtagacctctctttagtgtcattggttcaatcatgtgtttgctcatttgtgtttccagATTTCACGTGTATGATGTTGATACAAAATATTTCAATTTACCTGTGAAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00540.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
gtacatttcttcattatgtagatttgttctgttc---actacatctggtagacctctctttagtgtcattggttcaatcatgtgtttgctcatt----tgtgtttccagATTTCACGTGTATGATGTTGATACAAAATATTTCAATTTACCTGTGAAG
||| | || | | | || |   ||    || |||    ||| |  | ||   |   |  ||    | ||   ||  |        || ||||||    | |  |||||||||||| ||||||||||||||||||||||||   |   | ||    | |
gta-agttatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgacttataattccctcttactcattttacttttcttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG

upper sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 3
gtacatttcttcattatgtagatttgttctgttcactacatctggtagacctctctttagtgtcatt-ggttcaatcatgtgttt--gctcatt----tgtgtttccagATTTCACGTGTATGATGTTGATACAAAATATTTCAATTTACCTGTGAAG
||| | || | | | || |   ||    || |||    |      | |    |||| || ||  ||  ||    || ||    |    ||||||    | |  |||||||||||| || |||||||||||||||||||||  ||   | ||    | |
gta-agttatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctgtattgcaataaggacttataattccctctaactcattttacttttcttccagATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctctctttagtgtcattggttcaatcatgtgtttgctcatttgtgtttccagATTTCACGTGTATGATGTTGATACAAAATATTTCAATTTACCTGTGAAG
                                              tgtttcc  CT-rich tract