Sequence
atgc intronic sequence ATGC exonic sequencegtaggtttcttgttatcaagtctaaatactatcctagttgtgtatatctctcatatgaggattctgattgatgagggttttttcatttgtgttatcagTTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g04660.2 (Oryza sativa), 3'ss of exon 3
gtaggtttcttgttatcaagtctaaatactatcctagttgtgtatatctctcatatgaggattc-tgattgatgagggttttttcatttgtgttatcagTTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAG
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-------gtatgtatccgaacctctgcatttccatttccttatacaaactcaatacacacattcatcgctgatattggatacccggtcctcttggcagATAATATCCA-TAGTTTGCCCTGTAATTATCTTTCTATCCGTTTATATCGCTAGGAGAGATGTCTATGATCTTCATCACGCAACATTAG
upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 2
gtaggtttcttgttatcaagtctaa-atactatcctagt----tgtgtatatctctcatatgaggattctgattgatgagggttttttcatttgtgttatcagTTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAG
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gtaagtttactggt-tcagttatagtatgtgatctttttattccttggataattacattaacaagattcttgtcatttactattttgttatg------gttagATTTATGCAGGTTTATTGCCTATAGTGATCTTTGTTGTTGTCTATATTCAAAGGAGAGATGTCTATGATCTTCATCATGCTGTGCTAT
upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G53100.2 (Glycine max), 3'ss of exon 2
gtaggtttcttgttatcaa-gtctaa-atactatcctagttgtgtatatctctcatatgaggattctgattgatgagggttttttcatttgtgttatcagTTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAG
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gtaagtttactgcttcggatatataacatgtgaatttttttccttgaataatt-acattaacaagattatct-tgtcatttattattttttcatggttagATATATGCAATTTTATTGCCCATAGTGATCTTTCTTGGTGTCTACATCCGAAGGAGAGACGTCTATGATCTTCATCATGCTGTGCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatctctcatatgaggattctgattgatgagggttttttcatttgtgttatcagTTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAG
ttttttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggtttcttgttatcaagtctaaatactatcctagttgtgtatatctctcatatgaggattctgattgatgagggttttttcatttgtgttatcagTTGTATTCAGTTCTGTTGCCTATAACCATTTTTCTCATCATCTATTTTCGTAGGAGAGATGTCTATGATCTTCATCATGCCATCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG