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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATCGGTACAAG

Basic information

species Vitis vinifera
transcript Vv14s0006g01790.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041108|gb|FQ444085.1|FQ444085
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352781654|gb|FQ468952.1|FQ468952
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352778017|gb|FQ467070.1|FQ467070
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|71870097|gb|DT019152.1|DT019152
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|349826342|gb|FQ417839.1|FQ417839
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|349826549|gb|FQ418640.1|FQ418640
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351055499|gb|FQ442295.1|FQ442295
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352777870|gb|FQ466923.1|FQ466923
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352763933|gb|FQ465383.1|FQ465383
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351047302|gb|FQ454913.1|FQ454913
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351055347|gb|FQ441945.1|FQ441945
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352769825|gb|FQ468753.1|FQ468753
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351019898|gb|FQ439715.1|FQ439715
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|77587229|gb|DV222748.1|DV222748
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|161712389|gb|FC061694.1|FC061694
EST:     TAATGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352777639|gb|FQ466692.1|FQ466692
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352768049|gb|FQ467448.1|FQ467448
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351056118|gb|FQ453580.1|FQ453580
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352768397|gb|FQ469573.1|FQ469573
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351016119|gb|FQ432074.1|FQ432074
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351043324|gb|FQ451376.1|FQ451376
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351016022|gb|FQ431977.1|FQ431977
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|71873314|gb|DT022369.1|DT022369
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351032857|gb|FQ461746.1|FQ461746
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|110425826|gb|EC992219.1|EC992219
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|351044375|gb|FQ452927.1|FQ452927
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|352790248|gb|FQ481447.1|FQ481447
EST:     CAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: CAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
EST: gi|161718844|gb|FC066359.1|FC066359
EST:     TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTG                         GGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC
genomic: TAAGGCGGGCAGAGGGCCATGCATTTGGGACCCTTATGTCAAAATACCTGgtcagattct ... ggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATCGGTACAAG
                                    agtaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagattctattctcactttgcattggatccttgcctttcttcttacttcttctatgtgtctctgatggatgagagtaaaaatggtggtacagGGAACATTGCTGAAAACGGAACCGCTGACGTGGCGGTGGACCAGTACCATCGGTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA