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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaaggaatgagacaaagattctcaatttaaggaatgtagtgtgatacaaaaattagagtgaggtaagctaattgaaatgaagaaaaacgaattaggactctacttcttcatgaactgatctatcttgcatttattacctttttgttcagGTAACACGACTTGCATGCGGAGGCTTCATCCTAGCGTACACATTCAACCATTGTATCTGTGATTCCTATGGTGCCTACCAGTTCATAACTGCTTTATCTG

Basic information

species Vitis vinifera
transcript Vv14s0006g01460.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690942|gb|EC963458.1|EC963458
EST:     ATATTTGGGACAGCTACCTGATTACCGATGCTCCCTTGCTTCGAATACAG                         GTAACACGACTTGCATGCGGAGGCTTCATCCTAGCGTACACATTCAACCAT
genomic: ATATTTGGGGCAGCTACCTGATTACCGATGCTCCCTTGCTTCGAATACAGgtcagtaagg ... ttttgttcagGTAACACGACTTGCATGCGGAGGCTTCATCCTAGCGTACACATTCAACCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggactctacttcttcatgaactgatctatcttgcatttattacctttttgttcagGTAACACGACTTGCATGCGGAGGCTTCATCCTAGCGTACACATTCAACCATTGTATCTGTGATTCCTATGGTGCCTACCAGTTCATAACTGCTTTATCTG
                  aactgat  putative branch site (score: 3)
                                   tttattaccttttt  putative PPT
                                  atttattaccttttt  TA-rich tract