Sequence
atgc intronic sequence ATGC exonic sequence...tcataaattaaatctgatttctcaacttaaaactgatactaagaaccccataacataacaccaattcaaccaaattctattcgatttctcaaaaacaaagAATTGGATTGCCAAAAAAAAAAAAGGGAGAATT
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccccataacataacaccaattcaaccaaattctattcgatttctcaaaaacaaagAATTGGATTGCCAAAAAAAAAAAAGGGAGAATT
acataac putative branch site (score: 3)
tttctca putative PPT
aaattctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcataaattaaatctgatttctcaacttaaaactgatactaagaaccccataacataacaccaattcaaccaaattctattcgatttctcaaaaacaaagAATTGGATTGCCAAAAAAAAAAAAGGGAGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - aaattaa
- - - - - - - - - -tctcaac
- - - - - - - - - - - - - - -aaactga
- - - - - - - - - - - - - - - - - - - - - -aacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacca