Sequence
atgc intronic sequence ATGC exonic sequencegtagggaaatgggattgcacctgtgacctgtttcatactcatactagctcttactaaaaccattttctttttcctcttctacattcttagATCTTTGAATCCTTGATACGTACATGGATGCGTAAGTGGAGATCTGGAGGTCTCAAAGGTGATGCAAACACGGTGCAGAATCACTGGTGGAGATGTGGTG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30137687|gb|CB923025.1|CB923025EST: CCCTTTCAGAAACTTATACCACACCTGAAAAGGCCCAATGGCACAGTAAG ATCTTTGAATCCTTGATACGTACATGGATGCGTAAGTGGAGATCTGGAGGT
genomic: CCCTTTCAGAAACTTATACCAAACCTGAAAAGTCCCAATGGCACAGTAAGgtagggaaat ... acattcttagATCTTTGAATCCTTGATACGTACATGGATGCGTAAGTGGAGATCTGGAGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactcatactagctcttactaaaaccattttctttttcctcttctacattcttagATCTTTGAATCCTTGATACGTACATGGATGCGTAAGTGGAGATCTGGAGGTCTCAAAGGTGATGCAAACACGGTGCAGAATCACTGGTGGAGATGTGGTG
tactaaa putative branch site (score: 1)
ccattttctttttcct CT-rich tract
attttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagggaaatgggattgcacctgtgacctgtttcatactcatactagctcttactaaaaccattttctttttcctcttctacattcttagATCTTTGAATCCTTGATACGTACATGGATGCGTAAGTGGAGATCTGGAGGTCTCAAAGGTGATGCAAACACGGTGCAGAATCACTGGTGGAGATGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG