1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgggtaaattatgattttgttgaggaagtttgttgtgttgtctttggatttcacttacccatttttcagtttaaaagaaaaaggaattttttttggtagATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAAGGAGAGTTAAACTGTGCGGGTATTCTCAGCTTAAGTTTCCATACCATCT
species | Vitis vinifera |
transcript | Vv13s0156g00650.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCCAGTTCGTTCCCCTCTCTCAATTTGATGATAATCTCCTCTTATCTG ATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAAEST: gi|71888416|gb|DT037471.1|DT037471
genomic: GACCCAGTTCGTTCCCCTCTCTCAATTTGATGATAATCTCCTCTTATCTGgtaccgtttt ... tttttggtagATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAA
EST: GACCCAGTTCGTTCCCCTCTCTCAATTTGATGATAATCTCCTCTTATCTG ATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAAEST: gi|71867335|gb|DT016390.1|DT016390
genomic: GACCCAGTTCGTTCCCCTCTCTCAATTTGATGATAATCTCCTCTTATCTGgtaccgtttt ... tttttggtagATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAA
EST: GACCCAGTTCGTTCCCCTCTCTCAATTTGATGATAATCTCCTCTTATCTG ATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAA
genomic: GACCCAGTTCGTTCCCCTCTCTCAATTTGATGATAATCTCCTCTTATCTGgtaccgtttt ... tttttggtagATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAA
tggatttcacttacccatttttcagtttaaaagaaaaaggaattttttttggtagATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAAGGAGAGTTAAACTGTGCGGGTATTCTCAGCTTAAGTTTCCATACCATCT
cacttac putative branch site (score: 2)
tttttttt putative PPT
atttttcagtttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggtaaattatgattttgttgaggaagtttgttgtgttgtctttggatttcacttacccatttttcagtttaaaagaaaaaggaattttttttggtagATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAGAGAAGGAGAGTTAAACTGTGCGGGTATTCTCAGCTTAAGTTTCCATACCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa