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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagccttacctgcaatgcaaaacccattttttttttctcctccttctttcatgtaatttggaaatgtttgcattgatgtttttgtttggtcttttgatgattctcagGAGTGAAGCTCTCCTATGGCACTGCTGGGTTCAGAGCGGACGCGTCGATTCTAGAATCCACGGTGTACAGAGTTGGGATATTGGCGGCTCTGAGGTCGCT

Basic information

species Vitis vinifera
transcript Vv13s0106g00380.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttggaaatgtttgcattgatgtttttgtttggtcttttgatgattctcagGAGTGAAGCTCTCCTATGGCACTGCTGGGTTCAGAGCGGACGCGTCGATTCTAGAATCCACGGTGTACAGAGTTGGGATATTGGCGGCTCTGAGGTCGCT
                                       ttttgat  putative branch site (score: 4)
                                                ttctc  putative PPT
                          tttttgttt  TA-rich tract