Sequence
atgc intronic sequence ATGC exonic sequence...cagatgtacgctaatgataattgttagtctgtctcttaaattattaagatattagatttactgtttctttcgtgacatggtttacaaatgctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g32060.1 (Oryza sativa), 3'ss of exon 1
cagatgtacgctaatgataattgttagtctgtctcttaaattattaagatattagatttact------gtttctttcgtgacatggtttaca-aatgctg-tatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGA
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-----gtaagaaccccgagtttgttcatgttttgcaaacgccatta-gatggcaaaatcatttcgtgaagttaaaacgagctcttgctgatatgacgttcctacgcagGGTTACATTGTCCTAAACAGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGA
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G26610.1 (Glycine max), 3'ss of exon 2
--cagatgtacgctaatgataattgttagtctgtctcttaaatt--attaagatattagatttactgtttctttcgtgacatggtttacaaatgctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGA
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atgccatgatcactgaattgcagtacaagcttttcttgagagttcaatcaatacagtttagatgctgtctgatgcat----tgttattcaactgatgtttgcagGGATACATTGTTCTGAATAGGCCATGGGCCTTTGTTCAGTGGCTGGAAAAGACTAAAATAGAGGAAGA
upper sequence: Vv13s0084g00830.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G37490.2 (Glycine max), 3'ss of exon 2
-cagatgtacgctaatgataattgttagtctgtctcttaaattattaagatattagatttactgtttctttcgtgacatggtttacaaatgctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGA
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attgatagtgagatgccatgatcactgaattacagtacaagcttttcttcagtca-atacagtttagatgttgtctgatgcattgcataatctgtttgcagGGATACATTGTTTTGAATAGGCCATGGGCCTTTGTTCAGTGGCTGGAAAAGACTAAAATAGAGGAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30128013|gb|CB913352.1|CB913352EST: AAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGG GGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAG
genomic: AAGAGATTCCTACTTTTGTGGTTGATCCTCTTCCTGCAGGTTTGGATCGGgtgagaaatc ... ctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagatattagatttactgtttctttcgtgacatggtttacaaatgctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGA
attagattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagatgtacgctaatgataattgttagtctgtctcttaaattattaagatattagatttactgtttctttcgtgacatggtttacaaatgctgtatccagGGATACATTGTCCTAAACAGACCATGGGCCTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - -gctaatg
- - - - - - - - - - - - - - -tgtctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtt