1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtaattttcttttctgaggtaaaatgttctctcattttagaatgctgcctccttttcttcattgacaattcttcttcatctccctgttatttgaagcagAGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAG
species | Vitis vinifera |
transcript | Vv13s0074g00040.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTCGGTCTCACTTTCGATAATCTCACCCAGCGCAAGATCATTGAACAG AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTEST: gi|351029624|gb|FQ427464.1|FQ427464
genomic: GCCTCGGTCTCACTTTCGATAATCTCACCCAGCGCAAGATCATTGAACAGgtcgcctact ... tttgaagcagAGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTT
EST: GCCTCGGTCTCACTTTCGATAATCTCACCCAGCGCAAGATCATTGAACAG AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTEST: gi|161713295|gb|FC064025.1|FC064025
genomic: GCCTCGGTCTCACTTTCGATAATCTCACCCAGCGCAAGATCATTGAACAGgtcgcctact ... tttgaagcagAGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTT
EST: GCCTCGGTCTCACTTTCGATAATCTCACCCAGCGCAAGATCATTGAACAG AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTT
genomic: GCCTCGGTCTCACTTTCGATAATCTCACCCAGCGCAAGATCATTGAACAGgtcgcctact ... tttgaagcagAGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTT
ctgcctccttttcttcattgacaattcttcttcatctccctgttatttgaagcagAGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAG
cattgac putative branch site (score: 3)
ttcttcttcatctccc putative PPT
ttatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaattttcttttctgaggtaaaatgttctctcattttagaatgctgcctccttttcttcattgacaattcttcttcatctccctgttatttgaagcagAGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAG
- - - - - - - - - ggtaaaa
- - - - - - - - - - - - - - -ctctcat
- - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - cctcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgac