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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC

Basic information

species Vitis vinifera
transcript Vv13s0067g00220.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 3'ss of exon 1
gtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaatt-----ctgtgatgagacggaaagtggtggcggt-------gcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC
   |  | |||   || |    | |     ||    ||   |   | || |  ||||     |  |  | | |   |   |  || | ||        |||| || || || || ||||| || || ||||||||||||||||| ||||||||||| |||||  ||||  | | |||||| |||||||| ||||| || ||
tatacagtcttacttcaactgtcatgacaactgac-cacaaaacaactacggcaattaagggcactactaatatccattatattgtctgttactgcaacagGAGGACACATCAACCCAGCAGTTACTTTTGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACCCGGGCCATCTTCTACATAGTGATGCAATGCCTAGGGGC

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
gtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaa-tatgagaattctgtgatgagacggaaagtggtggc-----ggtgca------gGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC
   |       |  ||   ||| | |    | ||  || |  |  ||  |    |   |    |    ||  |  || ||  |     | ||||      || || || || || ||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||  | | ||||||  | ||||| |||||||||||
-gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggccaccacaccactaatggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G174807_T01 (Zea mays), 3'ss of exon 1
------------------------------------------------------------------------------------gtgatggccttttctcgaaaaaccttttgtctatttc---atgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC
                                                                                    |||    |   ||  |  |      | | ||| | ||    | | | |           ||| |              |   |    |||||| ||||| || || || ||||||||||| ||||||||| |||| |||||| |||| || || ||||| ||||  |||||  | |||||||||||||| ||
gtaccgtacacgccgcccgcccggccgcctctttggcttcgtcctctgtttctttcttcctctgcttgccttgcctcgtcgtttgtgcaaactggtttgctgatgtttctctctctctctctctctctctctctctctctctctctctctctctctctctcttctcgcaactgcagGCGGGCACATCAACCCGGCGGTGACCTTCGGGCTGTTCCTGGCGAGGAAGTTGTCCCTCACCAGGGCGGTGTTTTACATCATCATGCAGTGCCTGGGCGC

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G174807_T03 (Zea mays), 3'ss of exon 1
gtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC-----------------------------------------------------------------------------------------
                                                                               |    |||||| ||||| || || || ||||||||||| ||||||||| |||| |||||| |||| || || ||||| ||||  |||||  | |||||||||||||| ||                                                                                         
------------------------------------------------------------------------------cgcaactgcaggcgggcacatcaacccggcggtgaccttcgggctgttcctggcgaggaagttgtccctcaccagggcggtgttttacatcatcatgcagTGCCTGGGCGCCATCTGCGGCGCGGGCGTCGTCAAGGGGTTCCAGCAGGGGCTGTACATGGGCAACGGCGGCGGCGCCAACGTCGTGGCGCCCGGCTACA

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AC209208.3_FGT002 (Zea mays), 3'ss of exon 1
-------gtgatggccttttc--tcgaaaaaccttttgtctatttcatgtatgtaata--tgagaattctgtgatgagacggaaagtggtggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC
       |  |    |  | |  |  |  || | |    | |   ||    |  || |    |  |  |    |   |  |  |  || |   |   |||| || || || || ||||| ||||| || ||||||||||| || ||||||||||| ||||| |||||  | | ||||||  | ||||| |||||||||||
gaactgtgaaagaatccatgcaattcagcaagcatagaccaagaacacaactacaacaaccaaagacaccactaatggttgttacctgctactgcaacagGAGGACACATCAACCCAGCTGTGACTTTCGGGCTGTTCTTAGCCAGGAAGCTGTCCCTGACTAGGGCCCTCTTCTACATCATCATGCAATGCCTGGGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351019993|gb|FQ439810.1|FQ439810
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161710542|gb|FC060688.1|FC060688
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161717035|gb|FC064675.1|FC064675
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161712606|gb|FC062208.1|FC062208
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713281|gb|FC063083.1|FC063083
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161715543|gb|FC067110.1|FC067110
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161718563|gb|FC069316.1|FC069316
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|110689996|gb|EE066710.1|EE066710
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACTGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161714519|gb|FC062969.1|FC062969
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161717605|gb|FC068519.1|FC068519
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713584|gb|FC063407.1|FC063407
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161716221|gb|FC069499.1|FC069499
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161706222|gb|FC054974.1|FC054974
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTTGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|37185580|gb|CF604933.1|CF604933
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACTGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|33409723|gb|CF215350.1|CF215350
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161720336|gb|FC071189.1|FC071189
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161719835|gb|FC065771.1|FC065771
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|33409719|gb|CF215346.1|CF215346
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713560|gb|FC062505.1|FC062505
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161719932|gb|FC066129.1|FC066129
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161713874|gb|FC062564.1|FC062564
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161715641|gb|FC067783.1|FC067783
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|33409074|gb|CF214701.1|CF214701
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161717612|gb|FC065625.1|FC065625
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|161712029|gb|FC060045.1|FC060045
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
EST: gi|110732652|gb|EE108136.1|EE108136
EST:     TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACTGCCGGAATCTCAG                         GTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC
genomic: TTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgtgatggcct ... ggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgtatgtaatatgagaattctgtgatgagacggaaagtggtggcggtgcagGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC
      tatgtaatat  TA-rich tract