Sequence
atgc intronic sequence ATGC exonic sequence...gtgcatattctgccgattggagctggatatgtttaatgggttttaacattttcttaatggataataattggttctctgtatgtcgtttttttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAACACATCTGCTGGGATTCTTGAGGTTATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g00210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g07382.1 (Oryza sativa), 3'ss of exon 1
gtgcatattctgccgattggagctggatatgtttaatgggttttaacattttcttaa---tggataataattggttctctgtatgtcgtttttttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAACACATCTGCTGGGATTCTTGAGGTTATGG
| | | | | || | | || || || || ||| | | ||| | | | | | | ||||| | |||||||| || |||| |||| | || ||||| |||| || ||||||||||| ||||||||||| || |||| ||||| ||||||||||||| || ||||| || ||||
-cggtgctaccgtcaatctaatattttta-gtgcaactttgcttgacagatgcctaagttttgggaggagcaactgatttgtattgtctatttttgttata-gGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGG
upper sequence: Vv13s0067g00210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G14620.1 (Glycine max), 3'ss of exon 1
----gtgcatattctgccgattggagctggatatgtttaatgggttttaacattttcttaatggataataattggttctctgtatgtcgtttttttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAACACATCTGCTGGGATTCTTGAGGTTATGG
|| | | |||| | ||| | | || | |||| | || | | | | |||| | | ||||| ||| | | ||| ||||| ||||||| || | |||||||||||||| || ||||||||||||||||| ||||||| || |||||||| || |||||||||||||| |||||||
gagattgaaagtgctgctg-ctggtggaacttgtgatgaatgaatgaatgaatggtgtatgggatggagcattgtctaattatatgt-gttgtgtctttt--agGGCTTGTATATTCGCACGAGGCTCACAATCAACCCGGATAAAGTTTATAGAATGGCCATGACAAAACTTAACACGTCAGCTGGGATTCTTGAAGTTATGG
upper sequence: Vv13s0067g00210.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G40800.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgcatattctgccgattggagctggatatgtttaatgggttttaacattttcttaatggataataattggttctctg-tatgt-cgtttttttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAACACATCTGCTGGGATTCTTGAGGTTATGG
| | || | | | | | ||| | | || | | | | ||| | | || | | ||| | | ||||| | | |||| | || |||| |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| | ||||| | |||| ||||| || |||||||
--aaaactgctatatgatatggtttgttgctgttacagtctcctactcccgtatcatttaggaatcactccttgacagctatctgcatttttctaataatagGGATTATACCTCCGCTCAAGGTTTACAATTAATCCGGATAAAGTTTATAGAATGACCATGAGGAAGATCAACACGGCAGCTGAAATTCTAGAAGTTATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718623|gb|FC068212.1|FC068212EST: TGGCCAAGTATGGGTTTCTTGCGCTTTCAGCATCTATAGTTGCTTTCTCT GGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGA
genomic: TGGCCAAGTATGGGTTTCTTGCGCTTTCAGCATCTATAGTTGCTTTCTCTgtaagttgct ... ttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acattttcttaatggataataattggttctctgtatgtcgtttttttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAACACATCTGCTGGGATTCTTGAGGTTATGG
tcgtttttttgtttt CT-rich tract
ttaatggataataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcatattctgccgattggagctggatatgtttaatgggttttaacattttcttaatggataataattggttctctgtatgtcgtttttttgttttaagGGCCTGTATATCCGTTCAAGGCTCACAATCAATCCTGATAAAGTTTATAGAATTGCCATGAGGAAGCTTAACACATCTGCTGGGATTCTTGAGGTTATGG
gtgcata
- - - - tctgccg
- - - - - - - - - -gagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtc