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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggatttaatttctcgggccataagttaaagacaggtgaattagggttagtgtttgtggctaaatgtgggattgactgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCCCCAGAAGGTTCTTCAAGCTGCTTATGAATATGGCGTCCATCTCAAGCTC

Basic information

species Vitis vinifera
transcript Vv13s0067g00180.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29783239|gb|CB349281.2|CB349281
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719057|gb|EE096594.1|EE096594
EST:     GATATGAAGATCGTCCCANTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCANCAGTTGATGATCCAGTAAAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110709500|gb|EE085016.1|EE085016
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|33402644|gb|CF208271.1|CF208271
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110380907|gb|EC946209.1|EC946209
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|349833114|gb|FQ416492.1|FQ416492
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719007|gb|EE096488.1|EE096488
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110720415|gb|EE096315.1|EE096315
EST:     GATATGAAGATCGTCCCAGTTCCCTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719311|gb|EE097144.1|EE097144
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110724872|gb|EE101081.1|EE101081
EST:     TCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: TCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719154|gb|EE096803.1|EE096803
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|37183792|gb|CF603146.1|CF603146
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719031|gb|EE096544.1|EE096544
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110720309|gb|EE096118.1|EE096118
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110372803|gb|EC936995.1|EC936995
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110716814|gb|EE092126.1|EE092126
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|30252909|gb|CB970460.1|CB970460
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACCCTTACCT                         GATCATCGATGGGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|34545999|gb|CF514231.1|CF514231
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|294966826|gb|GW837845.1|GW837845
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719061|gb|EE096606.1|EE096606
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110718231|gb|EE094824.1|EE094824
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|161707122|gb|FC056385.1|FC056385
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110712058|gb|EE089243.1|EE089243
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110713331|gb|EE089158.1|EE089158
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719682|gb|EE095023.1|EE095023
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719339|gb|EE097204.1|EE097204
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110696356|gb|EE072399.1|EE072399
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719501|gb|EE094682.1|EE094682
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110718538|gb|EE095483.1|EE095483
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110690740|gb|EE068165.1|EE068165
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110711424|gb|EE087889.1|EE087889
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110720542|gb|EE096554.1|EE096554
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719009|gb|EE096498.1|EE096498
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110719323|gb|EE097164.1|EE097164
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110709187|gb|EE084430.1|EE084430
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
EST: gi|110720705|gb|EE096871.1|EE096871
EST:     GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCT                         GATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC
genomic: GATATGAAGATCGTCCCAGTTCCTTGCTTGGAAGACAATTACTCTTACCTgtacggattt ... tgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaggtgaattagggttagtgtttgtggctaaatgtgggattgactgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCCCCAGAAGGTTCTTCAAGCTGCTTATGAATATGGCGTCCATCTCAAGCTC
                                          gactgat  putative branch site (score: 3)
     tgaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacggatttaatttctcgggccataagttaaagacaggtgaattagggttagtgtttgtggctaaatgtgggattgactgatttacagGATCATCGATGAGAGTTCTAAAGAAGCAGCAGTTGTTGATCCAGTAGAGCCCCAGAAGGTTCTTCAAGCTGCTTATGAATATGGCGTCCATCTCAAGCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT