1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactccatattttcctctttgctcccttttgctttctttctctttcgtagaattgaacccgcataaccttcttcatagtagggatttttccatttttttagcttaatttctgtatcttttttgtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTGCTGAAATCTCCAATAACAGGCTTCTTCAGGTGGTTTTGGTTTCTCCTCA
species | Vitis vinifera |
transcript | Vv13s0064g01270.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCT CTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTGEST: gi|351015543|gb|FQ447372.1|FQ447372
genomic: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCTgtactccata ... gtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTG
EST: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTACCCCATTTGCTCTCTCT CTAAAAGAGGCAGTGACAGTTCATTGCCTAATGTTGCTGGTGAGAGAGTTGEST: gi|349825487|gb|FQ419404.1|FQ419404
genomic: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCTgtactccata ... gtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTG
EST: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCT CTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTGEST: gi|349831115|gb|FQ420785.1|FQ420785
genomic: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCTgtactccata ... gtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTG
EST: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCT CTAAAAGAGGCAGTGACAGTTCATTGCCTAATGTTGCTGGTGAGAGAGTTGEST: gi|349825184|gb|FQ415731.1|FQ415731
genomic: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCTgtactccata ... gtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTG
EST: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCT CTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTG
genomic: TTTCCTCCACCAAGTCCACAGAAACCGCTTCTATCCCATTTGCTCTCTCTgtactccata ... gtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTG
gtagggatttttccatttttttagcttaatttctgtatcttttttgtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTGCTGAAATCTCCAATAACAGGCTTCTTCAGGTGGTTTTGGTTTCTCCTCA
gcttaat putative branch site (score: 4)
tcttttttgt putative PPT
atttttttagcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactccatattttcctctttgctcccttttgctttctttctctttcgtagaattgaacccgcataaccttcttcatagtagggatttttccatttttttagcttaatttctgtatcttttttgtgggtgcagCTAAAAGAGGCAGTGACAGTTCATTGCCTAATGGTGCTGGTGAGAGAGTTGCTGAAATCTCCAATAACAGGCTTCTTCAGGTGGTTTTGGTTTCTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC