1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacggacatcgtattcgttgttccccgatcttattttcaacttctctacgattcaagagatgtaatgcatttcattttgtttgattttgtgttgttttggaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCT
species | Vitis vinifera |
transcript | Vv13s0064g00850.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACCTTTGCAGCAGCAGTGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC ATGAGGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|77588180|gb|DV223301.1|DV223301
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|71872071|gb|DT021126.1|DT021126
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|110376398|gb|EC941462.1|EC941462
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|37187884|gb|CF607235.1|CF607235
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|71867496|gb|DT016551.1|DT016551
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|71873230|gb|DT022285.1|DT022285
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|110733216|gb|EE109213.1|EE109213
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAGGAAAACATCAACAACAAGCTTGCTCTCGTGATGAAGAGCEST: gi|87585575|gb|DY474236.1|DY474236
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|110366148|gb|EC929857.1|EC929857
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|77579663|gb|DV218684.1|DV218684
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|77577312|gb|DV217370.1|DV217370
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|110378405|gb|EC943536.1|EC943536
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCEST: gi|71866692|gb|DT015747.1|DT015747
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
EST: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACC AAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
genomic: AACCCTAGCAGCAGCAGCGTCGAGCGAAGATGGCGGCCCCCAAGAAAACCgtacggacat ... gaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGC
aagagatgtaatgcatttcattttgtttgattttgtgttgttttggaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCT
gtttgat putative branch site (score: 5)
attttgtttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggacatcgtattcgttgttccccgatcttattttcaacttctctacgattcaagagatgtaatgcatttcattttgtttgattttgtgttgttttggaaatcacagAAGAAGACTCAAGAAAACATCAACAACAAGCTCGCTCTCGTGATGAAGAGCGGCAAGTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC