Sequence
atgc intronic sequence ATGC exonic sequence...tgatgcgatgaaagaaatagctgaagctcgaaaatcaggacagagggttatgggagagccagtagttcctgggttagtccctgatgattctgggctctagGATCTTGACTTCATCAACGCAGCAAAGTATGTAATGAGTCCCCCTATTAGAGCATCGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0047g00920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G06100.1 (Glycine max), 3'ss of exon 7
tgatgcgatgaaagaaatagctgaagctcgaaaatcaggacagagggttatgggagagccagtagttcctgg--gttagtccctgatgattctgggctctagGATCTTGA-----CTTCATCAACGCAGCA-AAGTATGTAATGAGTCCCCCTATTAGAGCATCGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATC-----
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--------------------------------------gttagtgcctt-cacttgtttcattgtttttttgttgttattcttttattgtcttcagttttaagaatataagccgtgttcattctcatgtttcagGTATGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACAGGAGTTTTGCAG
upper sequence: Vv13s0047g00920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G04030.1 (Glycine max), 3'ss of exon 7
tgatgcgatgaaagaaatagctgaagctcgaaaatcaggacagagggttatgggagagccagtagttcctgggttagtccctgatgattctgggctctagGATCTTGACTTCATCAACGCAGCA-AAGTATGTAATGAGTCCCCCTATTAGAGCATCGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATC-----
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---------gcaagtgccttcacttgtttcaatgtttttattta---ttttttatttttttattgttgttcttttattgccttaaattttaagaacatataagcctta-ttcattctcatgtttcagGTATGTCATGAGCCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACCGGCGTTTTGCAG
upper sequence: Vv13s0047g00920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G44690.1 (Glycine max), 3'ss of exon 7
tgatgcgatgaaagaaatagctgaagctcgaaaatcaggacagagggttatgggagagccagtagttcctgggttagtccctgatgattctgggctctagGATCTTGACTTCATCAACGCAGCAAAGTATGTAATGAGTCCCCCTATTAGAGCATCGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATC-----
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---------------------gcaagtgccttcacttgtttcaacgtttttttta----ttgttgttcttttattg--ccttgaattttaagaacatacaagccttgttcattctcatgtttcag- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttatgggagagccagtagttcctgggttagtccctgatgattctgggctctagGATCTTGACTTCATCAACGCAGCAAAGTATGTAATGAGTCCCCCTATTAGAGCATCGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATC
ccctgat putative branch site (score: 4)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatgcgatgaaagaaatagctgaagctcgaaaatcaggacagagggttatgggagagccagtagttcctgggttagtccctgatgattctgggctctagGATCTTGACTTCATCAACGCAGCAAAGTATGTAATGAGTCCCCCTATTAGAGCATCGGGACATGACAAGGCCCTTCAAGCTGCTCTTTCAACTGGAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - aaagaaa
- - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - -gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - -ttatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctga