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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttgagttgcatggattgtattatgtatggttcatttttgaattctcaatcgtggatttacttgttttggttggttgcagTTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGAGGATTGAACGTGTGGATGATAACACGTTTCGGTGTTATGTGTATAGGTT

Basic information

species Vitis vinifera
transcript Vv13s0019g05380.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G18400.1 (Glycine max), 3'ss of exon 1
------gtaatgtttgagttgc-atggattgtattatgt--atggttcatttttgaattctcaatcgtgg--atttacttgtttt--ggt-tggttgcagTTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGAGGATTGAACGTGTGGATGATAACACGTTTCGGTGTTATGTGTATAGGTT
      | | |   |||||    |  | || | | || |  |   ||  |  |||| ||   ||   |||  ||||  |||||||  | | ||  |||||||||||||||| | || || ||||| ||||| || |||||||| || ||||||||||| || ||  | || ||||||||| |||||||||| ||||||||
atataggaactacatgagtaattaaagcttttctgattttaaacatttttacttgattttaaaaaactggtaattttgttgttttatgatgtgtgtgcagTTGAGTACATGCGGTTACCGGCGAGTCAGTATTCGGTGTTGGACGCGGAGAGGATTGAGCGGGTAAACGAAAACACGTTTAGGTGTTATGTTTATAGGTT

upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G24290.1 (Glycine max), 3'ss of exon 1
gtaatgtttgagt---tgcatggattgtattatgtatggttcatttttg---aattctcaa----tcgtggatttacttgttttggt----tggttgcagTTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGAGGATTGAACGTGTGGATGATAACACGTTTCGGTGTTATGTGTATAGGTT
 |||    | | |   |   |      | |  | | |  | |||||||     ||| | ||    | ||   |||| | | |||  |    ||  |||||||||||||||| | || || ||||| ||||| || ||||||||||| ||||||||||| || ||  | || ||||||||| ||||||| || ||||||||
ataaaaactaaatgagtaattaagccttttcttattttatacatttttacttgattttgaaaaattggtaattttattggattttatgatgtgtgtgcagTTGAGTACATGCGGTTACCAGCGAGTCAGTATTCAGTGTTGGATGCAGAGAGGATTGAGCGGGTAAACGAAAACACGTTTAGGTGTTACGTTTATAGGTT

upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G04440.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------gtaatgtttgagttgcatggat-tgtattatgtatggttcatttt----tgaatt-ctcaatcgtggatttacttgtt-ttggttggttgcagTTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGAGGATTGAACGTGTGGATGATAACACGTTTCGGTGTTATGTGTATAGGTT
               |  | | |||  |  ||   | | |  | || ||| || | | |     | |||  |  ||  || |||| ||| || ||  | | ||||||||||||| ||||| || |||||||| |||||||| ||| | ||||| |||||||||||  | || ||||||||||||||| | |||||||| |||| |||
gtaacttcagcgcgattctctctgatctaaatttctgtttcctgtggatgattaaatctggatcggattgtttgattttgaatttgctttttgtttatggtttgcagTTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGAGGATTGAGAGAGTTGATGATAACACGTTTAGATGTTATGTTTATACGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351022786|gb|FQ428695.1|FQ428695
EST:     TGCTCGGCGCAGGGAGTCGGTTTCGGTTAAACAACTTGAACGGCCTCTAG                         TTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGA
genomic: TGCTCGGCGCAGGGAGTCGGTTTCGGTTAAACAACTTGAACGGCCTCTAGgtaatgtttg ... ttggttgcagTTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggttcatttttgaattctcaatcgtggatttacttgttttggttggttgcagTTGAGTACATGAGTTTGCCTGCGAGCCAGTACTCTGTGTTGGATGCTGAGAGGATTGAACGTGTGGATGATAACACGTTTCGGTGTTATGTGTATAGGTT
     ttcatttttgaatt  TA-rich tract