1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtctctcttattctgatgaatttcttgatatcacgtcttttcccctgtcttttatctttctgaatctttagcttttcttctaggtccggccgccagagctttcttcctaaattgattttggtctttgaattctggtatttttttgggtggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCTGGACAAGAAGTATGGGAACGGGTCGAGGACGAATCGCGCCACGGACAG
species | Vitis vinifera |
transcript | Vv13s0019g05240.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|71858530|gb|DT007585.1|DT007585
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|71857288|gb|DT006343.1|DT006343
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|161718084|gb|FC067601.1|FC067601
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|71861516|gb|DT010571.1|DT010571
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|294966128|gb|GW837495.1|GW837495
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|71870084|gb|DT019139.1|DT019139
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG GTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCEST: gi|161720867|gb|FC070982.1|FC070982
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
EST: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAG TTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
genomic: CACAATCTCCGAAATCGACATCTACAAGTCCGAGCCTTGGGACCTCCCAGgtttgtctct ... ggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGC
ttcctaaattgattttggtctttgaattctggtatttttttgggtggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCTGGACAAGAAGTATGGGAACGGGTCGAGGACGAATCGCGCCACGGACAG
aaattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctctcttattctgatgaatttcttgatatcacgtcttttcccctgtcttttatctttctgaatctttagcttttcttctaggtccggccgccagagctttcttcctaaattgattttggtctttgaattctggtatttttttgggtggtgttttagGTCAGTCCAAGCTGAAGAGTAGGGACCTGGAATGGTATTTCTTCAGTGTGCTGGACAAGAAGTATGGGAACGGGTCGAGGACGAATCGCGCCACGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT