Sequence
atgc intronic sequence ATGC exonic sequence...tggttatattttgtgccagtttttttctaggtttcctcatgaaattttttgtttcattagtttcttttcctttagttctcatgtaaatttattttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G28000.1 (Glycine max), 3'ss of exon 1
------tggttatattttgtgc--cagtttttttctaggtttcctcatgaaattttttgtttcattagtttcttttcctttagttctcatgtaaatttattttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
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atactgttgtcattttatgtcttgcacacttgtttttgtttgttttataagttgtaagtacttgttgatctaacatc--ttagcattcgtgtaaactc------ttagGTGTTCGTTACCTGGAGAAAGCTGTCTTTAAACTTGACTATGGCCAACTGAAGTTAGTATTCCATGCACTTGAGGAGCGCAAACAGCTTATTGACAATGC
upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G32390.1 (Glycine max), 3'ss of exon 1
-tggttatattttgtgccagtttttttctaggtttcctcatgaaattttttgtttcattagtttcttttcctttagttctcatgtaaatttatt--ttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
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aatgttttattaaatttatgcactgttctattttttttagattaacttttc---taaacactttatctaaatctaatatgttggtgtttttgtgaactattagGCGTTCGATACCTGGAGAAAGCTGTATTTAACCTTGACTATGGACAATTCAAGTTAGTGCTTCATGCACTTGAAGAGCGGAAACAGGTTATTGAAAATGC
upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G35170.1 (Glycine max), 3'ss of exon 1
tggttatattttgtgccagtttttttctaggtttcctcatg-aaattttttgtttcattagtttcttttcctttagttctcatgtaaatttatt--ttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
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---caatgttttattaaatttatgcaccgttctattttatttagattaactttctaaacacttgatctaaatctaatatgtcagtgtgtttgtgaactattagGTGTTCGATACCTGGAGAAAGCTGTATTTAACCTTGACTATGGACAATTCAAGTTAGTGCTTCATGCCCTTGAAGAGCGGAAACAGGTTATTGAAAATGC
upper sequence: Vv13s0019g04730.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G10370.1 (Arabidopsis thaliana), 3'ss of exon 1
------tggtt--atattttgtgccagtttttttctaggtttcctcatgaaattttttgtttcattagtttcttttcctttagttctcatgtaaatttattttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
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gtttgttaattcaataattgaaggaacatacatgttaaggatatgtattacatttgcggctcttgatacaccatttgatttagtgctcgtttacactta--------gGGGTTCGTTACTTGGAGAAAGCTGTTTTCAATCTTGATTATGGACAGCTGAAGCTTGTATTTCACGCTCTTGAGGAGCGTAAACAGCTCATTGAGAATGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgtttcattagtttcttttcctttagttctcatgtaaatttattttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
tttatttt CT-rich tract
tcatgtaaatttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggttatattttgtgccagtttttttctaggtttcctcatgaaattttttgtttcattagtttcttttcctttagttctcatgtaaatttattttgttagGGGTCCGGTACTTGGAGAAAGCTGTTTTTAATCTTGACTATGGACAACTAAAGCTGGTTTTCCATGCACTTGAGGAGCGCAAGCAGGTTATTGAGAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -tttgtgc
- - - - - - - - - - - - - - - - - cctcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgta