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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctctgtctggtttctgagaaagagaagaaaatatgttgattctggttttggataattgaagagtgaactgagctggggcaattggtttaattaaactcattttaagcgtttgattcttgtcaaatttggtttgactttgaacttgtattgcccatcagGGACGCTGATTGGAACCAGGCTTTTAATTATTCATTTAATTTGGACTTCTTGGCTTCTTGCATCCAGAAAACTAAAG

Basic information

species Vitis vinifera
transcript Vv13s0019g04600.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G35310.2 (Glycine max), 3'ss of exon 1
gtgagttctctgtctggtttctgagaaagagaagaaaatatgttgattctggttttggataattgaagagtgaactgagctggggcaattggtttaattaaactcattttaagcgtttgattcttgtcaaatttggt-ttgactttgaacttgtattgcccatcagGGACGCTGATTGGAACCAGGCTTTTAATTATTCATTTAATTTGGACTTCTTGGCTTCTTGCATCCAGAAAACTAAAG
                                                           | |||  |  | |   |||    |   |    |    || ||  || |  |||    | ||      |  ||  | ||  | | ||   ||||  ||| |     ||||| ||||||||||| || || ||||||| ||||| | |||||| ||||||||| ||||||||  |||| |||| ||
-----------------------------------------------------------ttattttaacgagggttgaaaaagaatagagaga--gatgaatttcgtgataattaatggaaatcaatggaagatagtacttatttcacacttaaattac-----agGGATGCTGATTGGAATCAAGCATTTAATTTTTCATCTGATTTGGGCTTCTTGGCGTCTTGCATTAAGAAGACTAGAG

upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G32210.1 (Glycine max), 3'ss of exon 1
gtgagttctctgtctggtttctgagaaagagaagaaaatatgttgattctggttttggataattgaagagtgaactgagctggggcaattggtttaattaaactcattttaagcgtttgattcttgtcaaatttggt-ttgactttgaacttgtattgcccatcagGGACGCTGATTGGAACCAGGCTTTTAATTATTCATTTAATTTGGACTTCTTGGCTTCTTGCATCCAGAAAACTAAAG
                                             ||| |  ||    ||||  || |  || |      | | |  |        || ||  || |  |||    | |||     |  ||  | ||  | | ||   | |   |||||     ||||| ||||||||||| || || ||||||| ||||| | |||||| ||||||||| ||||||||  |||| |||| ||
---------------------------------------------attttattt----ataac-gagggttggaaaagaatagagaga-------gatgaatttcgtgataa----tggatatcaatggaagatagtacttatttcacattcaaattgc-----agGGATGCTGATTGGAATCAAGCATTTAATTTTTCATCTGATTTGGGCTTCTTGGCGTCTTGCATTAAGAAGACTAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860031|gb|DT009086.1|DT009086
EST:     ATGCTGAGTGCGGAGTTTCAGAATCGCTCCAGTTTCTGCGTTAAGGATCC                         GGACGCTGATTGGAACCAGGCTTTTAATTATTCATTTAATTTGGACTTCTT
genomic: ATGCTGAGTGCGGAGTTTCAGAATCGCTCCAGTTTCTGCGTTAAGGATCCgtgagttctc ... tgcccatcagGGACGCTGATTGGAACCAGGCTTTTAATTATTCATTTAATTTGGACTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcgtttgattcttgtcaaatttggtttgactttgaacttgtattgcccatcagGGACGCTGATTGGAACCAGGCTTTTAATTATTCATTTAATTTGGACTTCTTGGCTTCTTGCATCCAGAAAACTAAAG
                         gtttgac  putative branch site (score: 4)
                tcaaattt  TA-rich tract