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...ttaaggaaaattttgctattgtaatcacattaacaattctgaacttttgattaagctcttataaacctgaaagctgataaaattccaaatttttatgcagCAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATCAGAATAGGCAGTTCGGCGCCCAATATCAAAGGGACAGATGTGCCCCTAA
species | Vitis vinifera |
transcript | Vv13s0019g04370.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCTACACTCCCTCGATCCTTGTAATTATCGGTCATCAAAT-G--G CAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATCEST: gi|161721838|gb|FC071151.1|FC071151
genomic: CTCTCTCTACACTCCCTCGATCCTTGTAATTATCGGTCATCAAATGGCAGgtgaatcaga ... ttttatgcagCAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATC
EST: TACACTCCCTCGATCCTTGTAATTATCGGTCATCAAATGGCAG CAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATC
genomic: TACACTCCCTCGATCCTTGTAATTATCGGTCATCAAATGGCAGgtgaatcaga ... ttttatgcagCAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATC
tttgattaagctcttataaacctgaaagctgataaaattccaaatttttatgcagCAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATCAGAATAGGCAGTTCGGCGCCCAATATCAAAGGGACAGATGTGCCCCTAA
agctgat putative branch site (score: 4)
tttttat putative PPT
tgataaaattccaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaggaaaattttgctattgtaatcacattaacaattctgaacttttgattaagctcttataaacctgaaagctgataaaattccaaatttttatgcagCAGTGTCAGGGAAGATTGTCCAAAACATTTTTGTAGCACAATGCTGCCATCAGAATAGGCAGTTCGGCGCCCAATATCAAAGGGACAGATGTGCCCCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - ggaaaat
- - - - - - - - - - - aatcaca
- - - - - - - - - - - - - - - -aacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa