Sequence
atgc intronic sequence ATGC exonic sequence...ttctaagttgcagtgtcttgcatatcgttgttttctttttcaagactaggtttttttctttaatatgtatattcagctttaatcccttttttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCACACTGGTTCTATGAGGACAACTCAGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G08170.1 (Glycine max), 3'ss of exon 1
ttctaagttgcagtgtcttgcatatcgttgttttctttttcaagactaggttt-ttttctttaatatg--tatattcagctttaatc-ccttttttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCACACTGGTTCTATGAGGACAACTCAGTA
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ctccaactc----tgtaacgcacaaaatcatttgcattgacattcttccctttattttgttgagtataattgtgtcttcctatgttcatgttgttatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGTACGCACATTGGTTTTATGAAGATAATTCTGTA
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G27200.1 (Glycine max), 3'ss of exon 1
ttctaagttgcagtgtcttgcatatcgttgttttctttttcaagactaggtttttttctttaatatgtatattcagctttaatc-ccttttttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCACACTGGTTCTATGAGGACAACTCAGTA
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-attcatttgcattgacattcttccctttattttgtcgagtataagtgtcctcctatgtttattttgttatgaaaaccctgttcatgttgttatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTA
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G13570.2 (Arabidopsis thaliana), 3'ss of exon 1
------ttctaagttgcagtgtcttgcatatcgttgttttctttttcaa---gactaggtttttttctttaatatgtatattcagctttaatcccttttttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCACACTGGTTCTATGAGGACAACTCAGTA
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gtaatttcatcaatcg-agtgtttttcttcttttttctgtggatagtgaagcgattgggctcgaattgattttcggtaactgatgctttgtgatggggttttgtttcagTCGATTTGTTTTGAATGTCCCTGAAGAAGATCAACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATAATGCTGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110366533|gb|EC930443.1|EC930443EST: CGACGATCTCTGTAG TCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGAT
genomic: CGACGATCTCTGTAGgtaagtacac ... ttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaggtttttttctttaatatgtatattcagctttaatcccttttttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCACACTGGTTCTATGAGGACAACTCAGTA
ctttaat putative branch site (score: 4)
ctttaatccctttttt CT-rich tract
tttttttctttaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctaagttgcagtgtcttgcatatcgttgttttctttttcaagactaggtttttttctttaatatgtatattcagctttaatcccttttttccctgcagTCGTTTTGTCTTGAATGTGCCGAAGGAAGACCAACAATCATTTGAGAGGATTTTATTTCTTGTGGAGTATGCACACTGGTTCTATGAGGACAACTCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttt