1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagtttttcatctgtaaacaatattggagttttgtttttttttttttttttcactgagtttgtgagaggtgcttctgttaaatacaaactgcattgcagAAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGCGGAAATGGGTTCTGAAGCCTTGCAAGCTACTAAGGTATATCGCCAACTTCTCAAAGCTG
species | Vitis vinifera |
transcript | Vv13s0019g03660.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTTTTATGTCCTTGATCTCCATCACTCGCTTCTTCAAGAAAAACCAG AAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGTGGAAATGGGTEST: gi|349830433|gb|FQ420693.1|FQ420693
genomic: GATTTTTTATGTCCTTGATCTCCATCACTCGCTTCTTCAAGAAAAACCAGgtaacaacac ... tgcattgcagAAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGCGGAAATGGGT
EST: GATTTTTTATGTCCTTGATCTCCATCACTCGCTTCTTCAAGAAAAACCAG AAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGTGGAAATGGGTEST: gi|349809735|gb|FQ398360.1|FQ398360
genomic: GATTTTTTATGTCCTTGATCTCCATCACTCGCTTCTTCAAGAAAAACCAGgtaacaacac ... tgcattgcagAAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGCGGAAATGGGT
EST: GATTTTTTATGTCCTTGATCTCCATCACTCGCTTCTTCAAGAAAAACCAG AAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGTGGAAATGGGT
genomic: GATTTTTTATGTCCTTGATCTCCATCACTCGCTTCTTCAAGAAAAACCAGgtaacaacac ... tgcattgcagAAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGCGGAAATGGGT
tttttttcactgagtttgtgagaggtgcttctgttaaatacaaactgcattgcagAAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGCGGAAATGGGTTCTGAAGCCTTGCAAGCTACTAAGGTATATCGCCAACTTCTCAAAGCTG
ttaaatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtttttcatctgtaaacaatattggagttttgtttttttttttttttttcactgagtttgtgagaggtgcttctgttaaatacaaactgcattgcagAAAAGGTGAAAAAGAGATAGATCAAGAGAAGGACAAACTGCGGAAATGGGTTCTGAAGCCTTGCAAGCTACTAAGGTATATCGCCAACTTCTCAAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa