Sequence
atgc intronic sequence ATGC exonic sequencegtaattatatattttcttcccatttcctgcctttttttatcatttgagatttatatatattcattcattcgcttcttgtggatttgcagATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGAATTATATACGCAATTTATGTGTTGGTTGGGTAGTGGAAGATGAATGTTT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389772|gb|EC954638.1|EC954638EST: TCGCCATCCTCCTCCCTCCTGTCGGCGTCTTCCTCCGCTATGGCTGTGGA ATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGA
genomic: TCGCCATCCTCCTCCCTCCTGTCGGCGTCTTCCTCCGCTATGGCTGTGGAgtaattatat ... ggatttgcagATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGA
EST:
gi|110365954|gb|EC929532.1|EC929532EST: TCGCCATCCTCCTCCCTCCTGTCGGCGTCTTCCTCCGCTATGGCTGTGGA ATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGA
genomic: TCGCCATCCTCCTCCCTCCTGTCGGCGTCTTCCTCCGCTATGGCTGTGGAgtaattatat ... ggatttgcagATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatcatttgagatttatatatattcattcattcgcttcttgtggatttgcagATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGAATTATATACGCAATTTATGTGTTGGTTGGGTAGTGGAAGATGAATGTTT
atttgagatttatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattatatattttcttcccatttcctgcctttttttatcatttgagatttatatatattcattcattcgcttcttgtggatttgcagATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGAATTATATACGCAATTTATGTGTTGGTTGGGTAGTGGAAGATGAATGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG