1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgtaggatggaaatttgtcatatatattttttgagtttcttgtgataattatctggattgatttttctgatcttgtaaatttgcccttggtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGGGTTTCCTCCTCACACCAATTATCTATTTTTAGGGGACTATGTGGATCG
species | Vitis vinifera |
transcript | Vv13s0019g02410.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|71859511|gb|DT008566.1|DT008566
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|351026429|gb|FQ428441.1|FQ428441
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|37188945|gb|CF608294.1|CF608294
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|161715255|gb|FC065804.1|FC065804
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|352768147|gb|FQ467286.1|FQ467286
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|71858831|gb|DT007886.1|DT007886
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|294966379|gb|GW839486.1|GW839486
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|26257357|gb|CA808420.1|CA808420
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTGAAGGCTTTTTGAATACGGGGEST: gi|30133974|gb|CB919313.1|CB919313
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGEST: gi|161718447|gb|FC064797.1|FC064797
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
EST: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTG GTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
genomic: TCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgttttg ... gtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGG
ataattatctggattgatttttctgatcttgtaaatttgcccttggtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGGGTTTCCTCCTCACACCAATTATCTATTTTTAGGGGACTATGTGGATCG
ttctgat putative branch site (score: 3)
attgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaggatggaaatttgtcatatatattttttgagtttcttgtgataattatctggattgatttttctgatcttgtaaatttgcccttggtggtttcagGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGGGTTTCCTCCTCACACCAATTATCTATTTTTAGGGGACTATGTGGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - gatggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggattg