1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggaaatcattttccttctttgatctgttgggctgaagtgattcaattcgtatcattttacttgtagcagtttctcttatttcatgtttcttttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGGGGACGGAGGAGTACTGAAGACAATTATAAAGCAAGCCAAACCTGATGC
species | Vitis vinifera |
transcript | Vv13s0019g01900.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGEST: gi|351024603|gb|FQ433018.1|FQ433018
genomic: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
EST: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGEST: gi|161711705|gb|FC059966.1|FC059966
genomic: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
EST: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGEST: gi|110415144|gb|EC981021.1|EC981021
genomic: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
EST: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGEST: gi|110417551|gb|EC983617.1|EC983617
genomic: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
EST: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGEST: gi|110422056|gb|EC988368.1|EC988368
genomic: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
EST: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGEST: gi|30302283|gb|CB979077.1|CB979077
genomic: ATATCTCTTCATCTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
EST: CTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTG CTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
genomic: CTCTTTCACTTTCCAGTTTTGCTCTCCTGTTGAATTTGgtgagtagaa ... tttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCG
ttcgtatcattttacttgtagcagtttctcttatttcatgtttcttttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGGGGACGGAGGAGTACTGAAGACAATTATAAAGCAAGCCAAACCTGATGC
tttctcttatttcatg CT-rich tract
atcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaatcattttccttctttgatctgttgggctgaagtgattcaattcgtatcattttacttgtagcagtttctcttatttcatgtttcttttgtctaagCTGGTGATTGAAACTTTAGAGAAGCCATGGGTGATGCAATTGATTTGACCGGGGACGGAGGAGTACTGAAGACAATTATAAAGCAAGCCAAACCTGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- aaatcat
- - - - - -tccttct
- - - - - - - - - - - - - - gggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagca