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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

cttaatggccactctcttaccttatcaatttcatggttttctgtgttttttttttccataaaaagGAAGAGATTAGAATCAGCAAGACCATCTTCTCAGCATAGTTGCAGGGCGTTCATGGGATCGCAAACTTTGGTAGCATCACTATGATAGTGAGATTCTCTC

Basic information

species Vitis vinifera
transcript Vv13s0019g01830.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctcttaccttatcaatttcatggttttctgtgttttttttttccataaaaagGAAGAGATTAGAATCAGCAAGACCATCTTCTCAGCATAGTTGCAGGGCGTTCATGGGATCGCAAACTTTGGTAGCATCACTATGATAGTGAGATTCTCTC
   ctcttac  putative branch site (score: 3)
 ttttctgtgttttttt  putative PPT
 tgttttttttttccat  TA-rich tract