1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acagttgacgatcatctccattaccatcaatttaatttcatcctctctttttttgaactttttattttcctagctcggtctgacacagtttgagtaatagGTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATG
species | Vitis vinifera |
transcript | Vv13s0019g01470.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCTACTTCGCCATCTCTGGCCTTCACATCTTAGGTGCGCTAGATGAG GTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCTAGCTCATCCAEST: gi|33407399|gb|CF213026.1|CF213026
genomic: TCGCCTACTTCGCCATCTCTGGCCTTCACATCTTAGGTGCGCTAGATGAGgtaagcaccc ... tgagtaatagGTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCA
EST: TCGCCTACTTCGCCATCTCTGGCCTTCACATCTTAGGTGCGCTAGATGAG GTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCAEST: gi|110713125|gb|EE088770.1|EE088770
genomic: TCGCCTACTTCGCCATCTCTGGCCTTCACATCTTAGGTGCGCTAGATGAGgtaagcaccc ... tgagtaatagGTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCA
EST: TCGCCTACTTCGCCATCTCTGGCCTTCACATCTTAGGTGCGCTAGATGAG GTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCA
genomic: TCGCCTACTTCGCCATCTCTGGCCTTCACATCTTAGGTGCGCTAGATGAGgtaagcaccc ... tgagtaatagGTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCA
tctttttttgaactttttattttcctagctcggtctgacacagtttgagtaatagGTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATG
gtctgac putative branch site (score: 3)
ttttgaactttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagttgacgatcatctccattaccatcaatttaatttcatcctctctttttttgaactttttattttcctagctcggtctgacacagtttgagtaatagGTTGACAAGGAGGAAGTTTCCAGTTGGGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - catctcc
- - - - - - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac