1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcacttctcgctgccacaatttttagggtttcatttttttttcttcgaattctatgagaaaatcgattaatctattgatgttttgtttttgtttgcagATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGAGTAATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTT
species | Vitis vinifera |
transcript | Vv13s0019g00910.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATGGCTTCTGCATCGCAAGCCAGCCTCCTCTTACAAAAGCAGCTCAAGG ATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGAEST: gi|110687133|gb|EE064279.1|EE064279
genomic: TATGGCTTCTGCATCGCAAGCCAGCCTCCTCTTACAAAAGCAGCTCAAGGgtcacttctc ... ttgtttgcagATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGA
EST: TATGGCTTCTGCATCGCAAGCCAGCCTCCTCTTACAAAAGCAGCTCAAGG ATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGA
genomic: TATGGCTTCTGCATCGCAAGCCAGCCTCCTCTTACAAAAGCAGCTCAAGGgtcacttctc ... ttgtttgcagATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGA
ttcgaattctatgagaaaatcgattaatctattgatgttttgtttttgtttgcagATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGAGTAATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTT
tattgat putative branch site (score: 3)
ttttgtttttgttt CT-rich tract
attaatctattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcacttctcgctgccacaatttttagggtttcatttttttttcttcgaattctatgagaaaatcgattaatctattgatgttttgtttttgtttgcagATCTCTGCAAACACCCGGTCGATGGATTTTCGGCTGGTTTGGTTGATGAGAGTAATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG