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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

Basic information

species Vitis vinifera
transcript Vv12s0178g00200.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaa-tgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
           | || ||  | |  |   ||  ||| |  ||   | |||       | ||||  |||   | | | |||     ||||     | |  ||||||| ||||||||||||||||| || || || |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||| ||||
----------gtttgattcttataccattgtccattcgttttttttaattcatggaatgagtt--gttcaaaaataataataactctcactctctctctagGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                | | | |   ||  | | | |   |||||  |     | ||||  |  |   || ||  || | |  | |  ||   |   ||||| || ||||||||||||||||| || ||||| || ||||| || ||||| ||  |||| || ||||| |||||||||||||||||||||||||||||||
---------------gtggttatcctgaacttagtctt--ttcagcaaagcggtatgttcctcatagcttaacggatcacc--ttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 2
---attaaa----ctgattctgt-ttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttg------ttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
   || |||     ||| |  |  | ||  ||  ||    |||||  |     || | ||  ||||||   |||      |  |||   ||||||  |  |||    |    ||||||| |||||||| |||||||||||  | ||||| ||||| |||||||||||||| || ||||| ||||| || |||||||||||||| ||||| ||||
gtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcattttt-catagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaat--ttgcattcagtgattatctttg-----ttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                     ||   ||  |  ||  ||  |  ||   || ||||          |  |   |||| ||  |||     | || |||| | |||||||||| |||||||| |||||||| || |||||||| || || || |||||||| || ||||| ||||| ||||||||||| |||||||| || |||||||
---------------------gtcaggaacttcatcttttaaaccatctatcatctccaagactccaactgcatttttaccaatttgaattccttaaaattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTGGTCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
      |||||| | |||    |    |     |  |  ||  | ||  | || |     | |   | ||   |||||| |  | |     |   || ||||||| || ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||| || ||||| || |||||||
----gtctgattttctttttcttttttactcttacgta-atgtaatgtatgtcgtctcctgctgaatatt---acatta-cattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
------------------------attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgt----tttcacacattaa-cgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                         | ||||||  |  ||| ||      | | ||  ||   ||||  |  |      |  ||  |||||        ||  ||| | |  | ||  |    |   |||| || ||||||||||||||||| || |||||||| || || || ||||| ||| | || || ||||| |||||||||||||| |||||||| |||||||
gttagttaattttcctgccacgctgtaaaactg--ttagttcgcacaattgggatg--ttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaat----gtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
        ||| ||  ||       | | ||  |||  ||||||    | |    ||| |     ||| |  || | | || | || ||    |     |||||||||| ||||||||||||||||| || || || |||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||| ||||| |
----gttcgatgctcgttctatctaccatgttcatt--cattcatctctgaaacctgtaaaggcagttgttgcagaatgac-cagcccatgcttctctctgcagGCTGGCTTTGCTGGTGATGATGCGCCCAGAGCAGTGTTCCCTAGTATAGTCGGCCGCCCTCGGCACACGGGTGTGATGGTTGGAATGGGCCAGAAGGACG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 3
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacatta-acgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
  | | |     ||     |||   |      || |||  ||     |   | |||   ||| |      |||  ||||   |   ||   |    |  ||||||| |||||||| || ||||| || |||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||||| || |||||||
-gtcagccccccctcccccctgaccc----ccaacttgatttgtacaaccttatttccaagtatg----ccactaattatgtgtaccttctactcttctagGCTGGTTTTGCTGGCGACGATGCACCAAGGGCTGTTTTCCCTAGTATTGTTGGCCGTCCTCGCCACACTGGTGTTATGGTAGGGATGGGACAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgc---agGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                                  |  ||   |     | |  ||    |  |||  || || | ||   | ||  | |    |||     ||||||| |||||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| || ||||| |
---------------------------------gtcagcccccgtccctgactttgacaacctttacttccaaatat-gccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2
--attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgt---gcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
    |      ||     | |    | | |||| |     | | |     | |  ||    |  |||  || || | ||   | ||  | |    |||     ||||||| |||||||| |||||||| || ||||| || ||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| || ||||| |
tgtctgcgacaatggcactggaatggtcaaggtcagcccccgtccc----tgactttgacaacctttacttccaaatat-gccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G067985_T08 (Zea mays), 3'ss of exon 1
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgc---agGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                             || |        |  |   | |  | |   |  ||| ||| || | ||   | ||  | |    ||| |   ||||||| |||||||| || ||||| || ||||| || ||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||
-----------------------------gtcagccc---cttggccctgacttgtacaacctttatttccaaatat-gccactaattatgtctgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 2
---attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttca-------cacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
   |||      | |  |  |  | |  |   |   |||    ||        | ||||  || |||  ||||||         |||||      | | |     |  ||||||| |||||||| |||||||||||  | ||||| ||||| ||||| ||||| || || || ||||| |||||||||||||||||||| || |||||||
gtaattgtggccacttggcgtcatatt-ctctgcagattcctttttttcaggcagcttttataatttaattttcagtcgatgttcattattttccccccatctcttatagGCTGGCTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGCCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G126010_T03 (Zea mays), 3'ss of exon 1
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattat-ctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
        | |  | | |   ||   || ||   ||   |   ||  | | | ||    |    |  || |  | ||      || ||||| | | | ||||| || || |||||||||||||| || || ||||| |||||||| ||||| ||  |||| || ||||| ||||||||||| || ||||||||||||||||
--------gttgttatct--cgttcagaagtcttttccaacaaagcaactctactcctgtgacctaattgttgctca-----actcctcaatatt-tacagGCCGGTTTCGCTGGTGATGATGCGCCAAGAGCTGTCTTCCCCAGCATTGTGGGAAGACCACGCCACACCGGTGTCATGGTCGGCATGGGCCAAAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 2
---attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgct-caaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
   | |  | |   |  |  |  | |       ||| |   | ||        | ||||  ||| |||    |||    | | | ||  | | |     |  ||||||| |||||||| ||||| |||||  | ||||| ||||| ||||| ||||| || || || ||||| |||||||||||||||||||| || |||||||
gtaactgtagtcgcttggcatcatattctctaatgattcctctttttccatacagcttt--tagattttcagtcaatgttaagcactttttccatctcttatagGCTGGCTTTGCTGGAGATGACGCTCCACGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGTCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgc-agGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
              ||  |   |       | |||||| |  |||  ||  |||     |      | | |   || |||   ||   |   || | | ||||||| ||||| || |||||||| || |||||||| ||||| || || ||||| || ||||| ||||| ||||||||||| |||||||| || |||||||
--------------gtcagtgcttttccccttaatttgta--cagccatagtctcccccacccaaatatgc---cactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
        | || |  ||  |||    | |    ||    |||||| |    | |||||   ||  |||   ||||| |         ||  |   ||||||||| ||||||||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| || || |||||||| ||||| || |||||||
--------gtttgtagttcttgt--tcacgctgcttcatgttcagtaa----cattgttctgttaatttaatcacatca-------caaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 2
attaaactgattctgtttgctgtg-gcgaggtgaatttgcattcagtgat-tatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
        | || |  ||  |||    |  |  | ||   |||| |  |  | | | || || |||  |   ||||| ||    ||    ||  ||  ||||||||| ||||||||||| ||||| || |||||||| ||||| || ||||| || || || || ||||| ||||| |||||||| ||||| || |||||||
--------gtttgtagttcttgttcatgctggtacttcatattctgcaacctttttctgctaatttaat---cacacgtt--ttcttacaaactattggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTCGGACGCCCCCGTCACACTGGTGTGATGGTTGGCATGGGGCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
--------------attaaactgattc-tgtttgctgtggcg----aggtgaatttgcattcagtgattatct--------ttgttagttttg-ttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                  || ||||   |||||  |||| |     ||  || | | || || ||| ||   |        ||||||  | || | || | | ||  |   | ||| |   | |||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||| ||||  |||| || || || ||||| |||||||||||||| || |||||||
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtt-tgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 2
-------------------attaaactgattctgtttgctgtggcgaggtgaatt-tgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                   | |  |    | ||  |||   |   || ||  |   | |  || ||| ||   |     | | |  | || | | || |    | ||| ||  | ||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||| |||| ||||| || || || ||||| |||||||||||||| || |||||||
gttagaacatgttttttccaattgatgagtgcttcttgtgctattgaagtagacagttcgctctgtgcttgctta----aatatgatattaatatat-attttttctccaatgtttgcagGCGGGTTTTGCAGGTGATGACGCTCCTAGGGCCGTGTTCCCCAGTATTATTGGGCGACCACGCCATACCGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1
---attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtg-attatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
   ||| ||||    | ||| |   ||||| ||       || | ||| |  || |    |  |   |  |  |  |  ||    | ||        |  ||||||||| ||||||||||||||||| ||  | ||||||||||||   || || ||||| || || ||||| ||||| ||||| ||||||||||| |||    
tccatttaacttgggc-gttgggcctggcgtgggccccgcgc-tgcagcgcgttgttcgagcaaacctgatgctggcg-atcgctg-tgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                                  |  ||     | |    |  ||||   ||||| |        |     ||           |||||||||||||||| || || |||||||| ||||| ||||| ||||| ||||| ||||| ||    ||||| || ||||||||||| ||||| || |||||||
---------------------------------gtgcgctcctggcgcggtttcttgtggattttgatccggggggtgtgttct-----------tgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                                  |  ||     | |    |  ||||   ||||| |        |      || |      | |||||||||||||||| || || |||||||| ||||| ||||| ||||| ||||| ||||| ||    ||||| || ||||||||||| ||||| || |||||||
---------------------------------gtgcgctcctggcgcgatttcttgtggattttgatccggggggtg-----tgtt------tttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365371|gb|EC928252.1|EC928252
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|37183457|gb|CF602811.1|CF602811
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|161711336|gb|FC059109.1|FC059109
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTC
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|161716641|gb|FC065562.1|FC065562
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTC
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|71885906|gb|DT034961.1|DT034961
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTC
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|161713214|gb|FC063658.1|FC063658
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTC
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|110700325|gb|EE078233.1|EE078233
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|37185060|gb|CF604413.1|CF604413
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|110718999|gb|EE096472.1|EE096472
EST:     GGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
genomic: GGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|110724122|gb|EE099673.1|EE099673
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|30251740|gb|CB969473.1|CB969473
EST:     GGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTC
genomic: GGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT
EST: gi|161714645|gb|FC064228.1|FC064228
EST:     CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAG                         GCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTC
genomic: CCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttgtcagt ... aaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                             cattaac  putative branch site (score: 2)
                ttttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -aaactga
- - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctc