Sequence
atgc intronic sequence ATGC exonic sequence...ctccctctcccttattatcaacatgaattttgtttcttgtctaaaaacatagaaggaacaataagaagtttctatctgaactttttaaatttaattgcagGACTTTAGTCTGGGAAGGAGAATTATACTTGCTTTTCAGACACTTGGGGTTGTCTTTGGTGATGTTGGAACAAGTCCACTATATACCTTTGGTGTGATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00250.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G05880.1 (Glycine max), 3'ss of exon 1
ctccctctcccttattatcaacatgaattttgtt--tcttgtctaaaaacatagaaggaacaataaga--agtttctatctgaactttttaaatttaattgcagGACTTTAGTCTGGGAAGGAGAATTATACTTGCTTTTCAGACACTTGGGGTTGTCTTTGGTGATGTTGGAACAAGTCCACTATATACCTTTGGTGTGATGT
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---actgctcatcatgag-attatatagcttgttagtgtagtggaacatcaacatctatatattaatattatctgcttgttgtcttcattatatttcaccgcagGACATCAGTGTGGGTAAGAAAATTGTATTGGCTTTTCAGACACTTGGTGTTGTCTTTGGTGATGTTGGAACAAGTCCATTATATACCTTCAGTGTTATGT
upper sequence: Vv12s0142g00250.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G19120.1 (Glycine max), 3'ss of exon 2
ctccctctcccttattatcaacatgaattttgtttcttgtctaaaaacatagaaggaacaataagaagtttctatctgaacttt---ttaaatttaattgcagGACTTTAGTCTGGGAAGGAGAATTATACTTGCTTTTCAGACACTTGGGGTTGTCTTTGGTGATGTTGGAACAAGTCCACTATATACCTTTGGTGTGATGT
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--gtcatcatgagattatatagcttgttactgtag-tggaacatcaacatctaatgtattaatactattatctgcttgttgtcttcattatatttcatcgcagGACATCAGTGTGGGTAAGAAAATTGTATTGGCTTTTCAGACACTTGGTGTTGTCTTTGGTGATGTGGGAACAAGTCCATTATATACGTTCAGTGTTATGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188468|gb|CF607817.1|CF607817EST: TCGATGTCGAGGCCCTCGAGATTCCCGGCGCACAGAGGAACGATTATGAG GACTTTAGTCTGGGAAGGAGAAT
genomic: TCGATGTCGAGGCCCTCGAGATTCCCGGCGCACAGAGGAACGATTATGAGgtgtgttttt ... ttaattgcagGACTTTAGTCTGGGAAGGAGAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacatagaaggaacaataagaagtttctatctgaactttttaaatttaattgcagGACTTTAGTCTGGGAAGGAGAATTATACTTGCTTTTCAGACACTTGGGGTTGTCTTTGGTGATGTTGGAACAAGTCCACTATATACCTTTGGTGTGATGT
atttaat putative branch site (score: 4)
tttctatctgaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctccctctcccttattatcaacatgaattttgtttcttgtctaaaaacatagaaggaacaataagaagtttctatctgaactttttaaatttaattgcagGACTTTAGTCTGGGAAGGAGAATTATACTTGCTTTTCAGACACTTGGGGTTGTCTTTGGTGATGTTGGAACAAGTCCACTATATACCTTTGGTGTGATGT
- ccctctc
- - - - - - - - - caacatg
- - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacaa