Sequence
atgc intronic sequence ATGC exonic sequence...ttttatatgtaatcaatctggccatattaataatttctgcatttctttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G07720.1 (Glycine max), 3'ss of exon 2
ttttatatgtaatcaatctggccatattaataatttctgcatttctttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
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atcctggtggagtctgtagcagaatctggctaaatattgtaattttagtatcatttttgtagttggattaatcttttcttctttttcctttattatgcagATGAAGTGGTGATGATTTCTGTTGCCTGCCTTGTCATTTTGTTCAGTGTACAGAAGTATGGAACAAGTAAAGTGGGGCTTGCTGTAGGACCTGCTTTGTT
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G19120.1 (Glycine max), 3'ss of exon 5
---ttttatatgtaatcaatctggccatattaataatttctgcatttctttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
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tgggttgtgaggtgggtatattattaagctgatttatatccttatgttgtgatcatttgtatggttgcttgaatcttttcttcgctttttgactc---tgcagATGAAGTGGTGATGATTTCAGTTGCCTGCCTTATCATTTTGTTCAGTGTACAAAAGTATGGAACAAGTAAAATGGGACTTGCAGTAGGACCTGCTTTGTT
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G24530.1 (Glycine max), 3'ss of exon 4
ttttatatgtaatcaatctggccatattaataatttctgcatttctttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
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atcctgatggagactgtagcagaaattggctaaatattgtaattttagtatcacttttgtagttggattaatcttttcttctttttcctttattatgcagATGAAGTGGTGATGATTTCTGTTGCCTGCCTTGTCATTTTGTTTAGTGTACAGAAGTATGGAACAAGTAAAGTGGGGCTTGCTGTAGGACCTGCTTTGTT
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G05880.1 (Glycine max), 3'ss of exon 4
---ttttatatgtaatcaatctggccatattaataatttctgcatttctttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
|| | || | | | | | | || || || | | || ||| | | || |||||| || |||||| || |||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||| |||| ||| || |||||| |||||||||||||||| |||||||| ||
tgggttgggaggtgggtatattattaagctgatttatatccttatgttgtggtcatttgtttggttgcttgaattttttcttcgctttttgactc---tgcagATGAAGTGGTGATGATTTCGGTTGCCTGTCTTATCATTTTGTTCAGTGTACAAAAGTATGGAACTAGTAAAATGGGACTTGCTGTAGGACCTGCTTTGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
ttttctctctcctttt CT-rich tract
ttttctctctcctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttatatgtaatcaatctggccatattaataatttctgcatttctttttccttttctctctcctttttttttttttttttttttttgtgtcatatgcagATGAAGTGGTGATGATTGCAGTTGCCTTCCTTATAATTTTGTTCAGTGTACAGAAGTTTGGGACAAGTAAAGTGGGACTTGCTGTAGGTCCTGCTTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - -ctggcca
- - - - - - - - - - - - - - - - - ttctgca