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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtcttgcattcatagattaaatttcatgaattaccctttaaaataaatcaataaaaattgtagaaaaatcacatcaacaattatggaatctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCAAGCGAGGTCGTGGCCAGCCTGGACACCATGTGGGACACCATCGACGCCG

Basic information

species Vitis vinifera
transcript Vv12s0059g01060.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014279|gb|FQ437281.1|FQ437281
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|71868304|gb|DT017359.1|DT017359
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351016276|gb|FQ446136.1|FQ446136
EST:     ACATTCGAGTCTGTGC-TATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110389288|gb|EC954114.1|EC954114
EST:     CATTCGGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: CATTC-GAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|349833167|gb|FQ416545.1|FQ416545
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|27583187|gb|CB005882.1|CB005882
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351024143|gb|FQ423566.1|FQ423566
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|71876179|gb|DT025234.1|DT025234
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110686995|gb|EE064016.1|EE064016
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|30129289|gb|CB914628.1|CB914628
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|349828838|gb|FQ419171.1|FQ419171
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|352777886|gb|FQ466939.1|FQ466939
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351016976|gb|FQ424403.1|FQ424403
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110698304|gb|EE075674.1|EE075674
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110357261|gb|EC920675.1|EC920675
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110412741|gb|EC978500.1|EC978500
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|161721798|gb|FC071135.1|FC071135
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|352774131|gb|FQ474654.1|FQ474654
EST:     ACATTCCAGTCTGTGCCTATCTCGACACCCCCCAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|352763595|gb|FQ473298.1|FQ473298
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACCCGCCAGG                         GTAAAGAGCTT
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTT
EST: gi|349825984|gb|FQ415789.1|FQ415789
EST:     ACATTCGAGTCTGTGC-TATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351023783|gb|FQ448334.1|FQ448334
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|352778049|gb|FQ467102.1|FQ467102
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|30125367|gb|CB910706.1|CB910706
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATCGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110698717|gb|EE076535.1|EE076535
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|30131972|gb|CB917311.1|CB917311
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATCGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110698488|gb|EE076042.1|EE076042
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351013588|gb|FQ429729.1|FQ429729
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|349827675|gb|FQ422543.1|FQ422543
EST:     ACATTCGAGTCTGTGC-TATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|352781710|gb|FQ469008.1|FQ469008
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|34549542|gb|CF517774.1|CF517774
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|71876100|gb|DT025155.1|DT025155
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351024895|gb|FQ433312.1|FQ433312
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|351031363|gb|FQ445388.1|FQ445388
EST:     ACATTCGAGTCTGTGC-TATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|349829293|gb|FQ419825.1|FQ419825
EST:     ACATTCGAGTCTGTGC-TATCTCGACACCGCCGAGACCCAACACGCCACG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGTCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|37185149|gb|CF604502.1|CF604502
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCT
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCT
EST: gi|110359490|gb|EC921049.1|EC921049
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|110412413|gb|EC978161.1|EC978161
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|294963980|gb|GW836855.1|GW836855
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
EST: gi|37190088|gb|CF609437.1|CF609437
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAG
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAG
EST: gi|349832701|gb|FQ422059.1|FQ422059
EST:     ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGG                         GTAAAGGGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA
genomic: ACATTCGAGTCTGTGCCTATCTCGACACCGCCGAGACCCAACACGCCAGGgtaagattcc ... tctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcaataaaaattgtagaaaaatcacatcaacaattatggaatctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCAAGCGAGGTCGTGGCCAGCCTGGACACCATGTGGGACACCATCGACGCCG
                                             tctcc  CT-rich tract
      aataaaaattgtagaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgtcttgcattcatagattaaatttcatgaattaccctttaaaataaatcaataaaaattgtagaaaaatcacatcaacaattatggaatctccggcagGTAAAGAGCTTTGCCATGGACATTCTGAAACGGAGTTCCAGCATCTGGGCAAGCGAGGTCGTGGCCAGCCTGGACACCATGTGGGACACCATCGACGCCG

- - - -gcattca
- - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaac