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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacatattacaactcaactttcatatccttattcattttgtggaattttttcttagttcgcattggaaaagcagGTGATAACGGCATTTGGAGTCGGGAGGGTATTTCTGTCAAAAAATGGTAAATTTTCCACGGGTGATATCGTGATAAACCCTTTCTTCCCATTCGCGGAGT

Basic information

species Vitis vinifera
transcript Vv12s0059g00670.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34319765|gb|CF372519.1|CF372519
EST:     TGACCGGTCACGACGACGGACTCTACTTTTCCCAGTTTGCCCTTAACGAG                         GTGATAACGGCATTTGGAGTCGGGAGGGTATTTCTGTCAAAAAATGGTAAA
genomic: TGACCGGTCACGACGACGGACTCTACTTTTCCCAGTTTGCCCTTAACGAGgttcacatat ... ggaaaagcagGTGATAACGGCATTTGGAGTCGGGAGGGTATTTCTGTCAAAAAATGGTAAA
EST: gi|34416623|gb|CF415377.1|CF415377
EST:     TGACCGGTCACGACGACGGGCTCTACTTTTCCCAATTTGCCCTTAACGAG                         GTGATAACGGCATTTGGAGTCGGGAGGGTAATTCAGTCAAAAAATGGTAAA
genomic: TGACCGGTCACGACGACGGACTCTACTTTTCCCAGTTTGCCCTTAACGAGgttcacatat ... ggaaaagcagGTGATAACGGCATTTGGAGTCGGGAGGGTATTTCTGTCAAAAAATGGTAAA
EST: gi|351041879|gb|FQ456089.1|FQ456089
EST:     TGACCGGTCACGACGACGGACTCTACTTTTCCCAGTTTGCCCTTAACGAG                         GTGATAACGGCATTTGGAGTCGGGAGGGTAATTCAGTCAAAAAATGGTAAA
genomic: TGACCGGTCACGACGACGGACTCTACTTTTCCCAGTTTGCCCTTAACGAGgttcacatat ... ggaaaagcagGTGATAACGGCATTTGGAGTCGGGAGGGTATTTCTGTCAAAAAATGGTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatatccttattcattttgtggaattttttcttagttcgcattggaaaagcagGTGATAACGGCATTTGGAGTCGGGAGGGTATTTCTGTCAAAAAATGGTAAATTTTCCACGGGTGATATCGTGATAAACCCTTTCTTCCCATTCGCGGAGT
                        aattttttcttagtt  TA-rich tract