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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaaatcgagtaaagagtttattgaatctgcaatgtttgagtgttaaaccgatttttttggaactcgaatctattcttattctgatgggttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAGGAAAATGCTCTCAAAATTAAGGAGTGGGAAGTGGGGAGGTTCCAAGATG

Basic information

species Vitis vinifera
transcript Vv12s0057g01240.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046192|gb|FQ442570.1|FQ442570
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351031552|gb|FQ459809.1|FQ459809
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351031792|gb|FQ460049.1|FQ460049
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGAT-CGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351035408|gb|FQ459675.1|FQ459675
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|161705682|gb|FC056610.1|FC056610
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351033918|gb|FQ462973.1|FQ462973
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|349820151|gb|FQ404873.1|FQ404873
EST:     AAGTGCATAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCTCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|349822807|gb|FQ398194.1|FQ398194
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351038829|gb|FQ448472.1|FQ448472
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351034477|gb|FQ463290.1|FQ463290
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|349821059|gb|FQ404312.1|FQ404312
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351039889|gb|FQ464927.1|FQ464927
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|110687718|gb|EE065446.1|EE065446
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|349810716|gb|FQ402959.1|FQ402959
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCCGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351048498|gb|FQ448772.1|FQ448772
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|352795534|gb|FQ480122.1|FQ480122
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|352789729|gb|FQ478544.1|FQ478544
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|71855838|gb|DT004893.1|DT004893
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351053257|gb|FQ459125.1|FQ459125
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351045623|gb|FQ440808.1|FQ440808
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351041749|gb|FQ455959.1|FQ455959
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|352798538|gb|FQ480563.1|FQ480563
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351046111|gb|FQ442489.1|FQ442489
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351054706|gb|FQ462736.1|FQ462736
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351022159|gb|FQ438744.1|FQ438744
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351055066|gb|FQ440405.1|FQ440405
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|349817938|gb|FQ407927.1|FQ407927
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|110724707|gb|EE100769.1|EE100769
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|110709662|gb|EE085318.1|EE085318
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351055925|gb|FQ453386.1|FQ453386
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTTGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|349817062|gb|FQ399809.1|FQ399809
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351044450|gb|FQ442981.1|FQ442981
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351057250|gb|FQ450957.1|FQ450957
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351036912|gb|FQ459434.1|FQ459434
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
EST: gi|351031889|gb|FQ460146.1|FQ460146
EST:     AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAG                         TCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG
genomic: AAGTGCAGAAAAGCAAGAAACTTTCTGTTGCCTGTGTTCGTGCTCAGCAGgttcccaatt ... ttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaccgatttttttggaactcgaatctattcttattctgatgggttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAGGAAAATGCTCTCAAAATTAAGGAGTGGGAAGTGGGGAGGTTCCAAGATG
                                   ttctgat  putative branch site (score: 3)
                                             ttttttgt  putative PPT
                       aatctattcttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtaaatcgagtaaagagtttattgaatctgcaatgtttgagtgttaaaccgatttttttggaactcgaatctattcttattctgatgggttttttgtagTCTGAATCCAAGGATGGATCCGCCACGGTTTCCCCACTGAGTGATTCACAGGAAAATGCTCTCAAAATTAAGGAGTGGGAAGTGGGGAGGTTCCAAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - aaagagt
- - - - - - - - - - - - - - ctgcaat
- - - - - - - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - aaaccga