1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tatgatttgttaggattgcaaggatgatgattagaagcatgagctgtacagataaaatatgactggtccttctgatacaattttacttttttttcttcagATTTCTCTGCCATCAGATCCGAAGAGTAGATCCTATCTCTGCAGTCTTTTCATTGGAGCTTGTTTGTTTTGTGGTGTTTACTTCATTGCAAGTGAATTTA
species | Vitis vinifera |
transcript | Vv12s0035g01350.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGACACTGAGTTGT ATTTCTCTGCCATCAGATCCGAAGAGTAGATCCTATCTCTGCAGTCTTTTC
genomic: GAAGACACTGAGTTGTgtaagctctc ... ttttcttcagATTTCTCTGCCATCAGATCCGAAGAGTAGATCCTATCTCTGCAGTCTTTTC
gtacagataaaatatgactggtccttctgatacaattttacttttttttcttcagATTTCTCTGCCATCAGATCCGAAGAGTAGATCCTATCTCTGCAGTCTTTTCATTGGAGCTTGTTTGTTTTGTGGTGTTTACTTCATTGCAAGTGAATTTA
ttctgat putative branch site (score: 3)
caattttacttttttt CT-rich tract
atacaattttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatttgttaggattgcaaggatgatgattagaagcatgagctgtacagataaaatatgactggtccttctgatacaattttacttttttttcttcagATTTCTCTGCCATCAGATCCGAAGAGTAGATCCTATCTCTGCAGTCTTTTCATTGGAGCTTGTTTGTTTTGTGGTGTTTACTTCATTGCAAGTGAATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - -gcaagga
- - - - - - - - - - - - - - - - - - -catgagc
- - - - - - - - - - - - - - - - - - - - - - - - - gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa